PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold1550075240.1 Flavonoid F3H low borderline
Lusiscaffold15580076990.1 Flavonoid F3H low borderline
Lusiscaffold15780082370.1 Flavonoid F3H medium borderline
Lusiscaffold16300088220.1 Flavonoid F3H medium borderline
Lusiscaffold1640090610.1 Flavonoid F3H medium borderline
Lusiscaffold1650091540.1 Flavonoid F3H medium borderline
Lusiscaffold1650091560.1 Flavonoid F3H low borderline
Lusiscaffold1690093730.1 Flavonoid F3H medium pass
Lusiscaffold16990094040.1 Flavonoid F3H medium borderline
Lusiscaffold1760097500.1 Flavonoid F3H medium borderline
Lusiscaffold1770098390.1 Flavonoid F3H medium borderline
Lusiscaffold1770098400.1 Flavonoid F3H medium borderline
Lusiscaffold1770098790.1 Flavonoid F3H medium borderline
Lusiscaffold18210102950.1 Flavonoid F3H medium borderline
Lusiscaffold1960111360.1 Flavonoid F3H medium borderline
Lusiscaffold1960111560.1 Flavonoid F3H medium pass
Lusiscaffold19820111820.1 Flavonoid F3H medium borderline
Lusiscaffold20030114940.1 Flavonoid F3H medium borderline
Lusiscaffold20030114950.1 Flavonoid F3H medium borderline
Lusiscaffold20030114960.1 Flavonoid F3H medium borderline
Lusiscaffold20112950.1 Flavonoid F3H medium borderline
Lusiscaffold20220116530.1 Flavonoid F3H medium borderline
Lusiscaffold2040117230.1 Flavonoid F3H medium borderline
Lusiscaffold20570118460.1 Flavonoid F3H medium pass
Lusiscaffold2160123730.1 Flavonoid F3H medium borderline
Lusiscaffold2160123870.1 Flavonoid F3H low borderline
Lusiscaffold2170125010.1 Flavonoid F3H medium borderline
Lusiscaffold21740127330.1 Flavonoid F3H medium borderline
Lusiscaffold2220129560.1 Flavonoid F3H low borderline
Lusiscaffold2220129580.1 Flavonoid F3H medium borderline
Lusiscaffold2220129590.1 Flavonoid F3H low borderline
Lusiscaffold2220129600.1 Flavonoid F3H medium borderline
Lusiscaffold2250130570.1 Flavonoid F3H medium borderline
Lusiscaffold2250130580.1 Flavonoid F3H medium borderline
Lusiscaffold2250130590.1 Flavonoid F3H medium borderline
Lusiscaffold2250130600.1 Flavonoid F3H medium pass
Lusiscaffold2250130630.1 Flavonoid F3H medium borderline
Lusiscaffold2250130640.1 Flavonoid F3H medium borderline
Lusiscaffold2250130650.1 Flavonoid F3H medium borderline
Lusiscaffold2250131600.1 Flavonoid F3H medium borderline
Lusiscaffold2310135910.1 Flavonoid F3H medium borderline
Lusiscaffold2330137840.1 Flavonoid F3H medium borderline
Lusiscaffold250142670.1 Flavonoid F3H medium borderline
Lusiscaffold250142680.1 Flavonoid F3H medium pass
Lusiscaffold250142940.1 Flavonoid F3H low borderline
Lusiscaffold2510147800.1 Flavonoid F3H medium borderline
Lusiscaffold2520149010.1 Flavonoid F3H medium borderline
Lusiscaffold2520149020.1 Flavonoid F3H medium borderline
Lusiscaffold2520149110.1 Flavonoid F3H medium borderline
Lusiscaffold25930151960.1 Flavonoid F3H medium borderline