PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold4900303030.1 Steroid CYP90D1 low borderline
Lusiscaffold5240312120.1 Steroid CYP90D1 low borderline
Lusiscaffold5400315390.1 Steroid CYP90D1 low borderline
Lusiscaffold6050333960.1 Steroid CYP90D1 low borderline
Lusiscaffold6050335490.1 Steroid CYP90D1 low borderline
Lusiscaffold6050335510.1 Steroid CYP90D1 low borderline
Lusiscaffold610336120.1 Steroid CYP90D1 low borderline
Lusiscaffold6410346970.1 Steroid CYP90D1 medium borderline
Lusiscaffold670355520.1 Steroid CYP90D1 low borderline
Lusiscaffold7340368820.1 Steroid CYP90D1 medium borderline
Lusiscaffold80385010.1 Steroid CYP90D1 low borderline
Lusiscaffold820390140.1 Steroid CYP90D1 low borderline
Lusiscaffold860396300.1 Steroid CYP90D1 medium borderline
Lusiscaffold8630402570.1 Steroid CYP90D1 low borderline
Lusiscaffold8660404150.1 Steroid CYP90D1 low borderline
Lusiscaffold9150417770.1 Steroid CYP90D1 low borderline
Lusiscaffold940424380.1 Steroid CYP90D1 low borderline
Lusiscaffold960426260.1 Steroid CYP90D1 medium borderline
Lusiscaffold1170025730.1 Steroid DET2 medium pass
Lusiscaffold1230036120.1 Steroid DET2 low borderline
Lusiscaffold14860063390.1 Steroid DET2 low borderline
Lusiscaffold1550076260.1 Steroid DET2 medium pass
Lusiscaffold3700243910.1 Steroid DET2 low borderline
Lusiscaffold4130257810.1 Steroid DET2 low borderline
Lusiscaffold5400315100.1 Steroid DET2 medium pass
Lusiscaffold6560349930.1 Steroid DET2 low borderline
Lusiscaffold5110310200.1 Steroid DWF1 medium pass
Lusiscaffold5110310210.1 Steroid DWF1 medium pass
Lusiscaffold5870328350.1 Steroid DWF1 medium pass
Lusiscaffold100002770.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold10360007640.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold10720012250.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold11340019120.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1230040430.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1230040440.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold12470041290.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold12470041300.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold1450061900.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold14860063240.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold14860063260.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076340.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076360.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1550076570.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1560077560.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1560080160.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold160084170.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold1720095460.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold1840104450.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold2000114370.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold20113240.1 Steroid DWF4/CYP90B1 low borderline