PlantSME Plant secondary metabolism enzyme database

Pogostemon cablin (pogostemon_cablin)

Imported from atlas release summary for Pogostemon cablin.

5906
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.46% Alkaloid pathway 21.44% Phenylpropanoid pathway 18.25% Flavonoid pathway 12.56% Rosmarinic acid pathway 9.04% Steroid pathway 5.25%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.11% BAHD 4.9% UGT 4.66% CYP76 4.63% 7DLGT 3.94% IFS 3.47% UFGT 3.36%
Other Families 61.73%
More Families (97)
T3O 526 3.28% 4CL 471 2.94% POD 448 2.79% F3'H/CYP75B 435 2.71% DWF4/CYP90B1 389 2.42% BR6OX2/CYP85A2 333 2.08% BBE 326 2.03% TPS 291 1.81% F3H 271 1.69% NMT 250 1.56% CYP71 250 1.56% GES 238 1.48% STR 237 1.48% CAD 197 1.23% G8O/G8H 189 1.18% CYP90D1 187 1.17% TRI/TRII 184 1.15% T16H 169 1.05% CODM/T6ODM 167 1.04% PYKS 163 1.02% SMT1/SMT2/SMT3 154 0.96% IO 151 0.94% HCT 150 0.93% RAS 150 0.93% CAS 148 0.92% IFR 144 0.9% H6H 141 0.88% LAC 137 0.85% 7DLH 135 0.84% F5H/CYP84A 134 0.84% COMT 134 0.84% PAL 132 0.82% F3'5'H/CYP75A 128 0.8% CSE 124 0.77% GS 115 0.72% FNS 102 0.64% CPD/CYP90A1 98 0.61% 16OMT 93 0.58% PMT 88 0.55% SLS 82 0.51% SGD 77 0.48% ANR 74 0.46% TAT 74 0.46% COR 70 0.44% CHS 67 0.42% NCS 62 0.39% FPPS 55 0.34% CNMT 54 0.34% CYP51G1 53 0.33% LAMT 50 0.31% ROT3/CYP90C1 45 0.28% AACT 44 0.27% CYP80B1 43 0.27% MPO 42 0.26% CCR 42 0.26% DXS 42 0.26% BR6OX1/CYP85A1 41 0.26% GGPPS 40 0.25% 8HGO 39 0.24% ANS/LDOX 38 0.24% DFR 36 0.22% ISY 34 0.21% CCoAOMT 34 0.21% 6OMT_4OMT_SOMT 30 0.19% SMO1/SMO2 28 0.17% SQE 27 0.17% CYP719 26 0.16% CPR 26 0.16% TYDC_DDC 25 0.16% SQS/FDFT1 25 0.16% HMGR 23 0.14% MVK 22 0.14% HPPR 20 0.12% TDC 18 0.11% CHI 17 0.11% DET2 16 0.1% MDS/IspF 15 0.09% CYP80F1 14 0.09% MVD 14 0.09% HDS/IspG 12 0.07% HDR/IspH 12 0.07% MCT/IspD 12 0.07% CMK/IspE 12 0.07% FK 11 0.07% ADC 10 0.06% FLS 10 0.06% DXR 10 0.06% HYD1 9 0.06% IDI 8 0.05% DWF5 6 0.04% CPI1 5 0.03% DWF1 5 0.03% XMT_MXMT_DXMT 4 0.02% DWF7 4 0.02% GPPS 4 0.02% PMK 4 0.02% HMGS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1976 22 UGT (631) View species results
Alkaloid pathway 1266 28 7DLGT (238) View species results
Phenylpropanoid pathway 1078 13 POD (387) View species results
Flavonoid pathway 742 15 UFGT (453) View species results
Rosmarinic acid pathway 534 7 C4H (262) View species results
Steroid pathway 310 16 CAS (110) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6862 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1086 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Pcabscaffold_6550919190.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_710949490.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_7600977450.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_770982980.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcabscaffold_770983010.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Pcabscaffold_7900995690.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_81003750.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_821018020.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_8801049440.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_901061450.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Pcabscaffold_9511087770.1 Alkaloid NCS low borderline NCS__00005__sp_Q67A25_NCS_THLFG
Pcabscaffold_961092700.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA