PlantSME Plant secondary metabolism enzyme database

Pogostemon cablin (pogostemon_cablin)

Imported from atlas release summary for Pogostemon cablin.

5906
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1976 22 UGT (631) View species results
Alkaloid pathway 1266 28 7DLGT (238) View species results
Phenylpropanoid pathway 1078 13 POD (387) View species results
Flavonoid pathway 742 15 UFGT (453) View species results
Rosmarinic acid pathway 534 7 C4H (262) View species results
Steroid pathway 310 16 CAS (110) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6862 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1086 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
Pcabscaffold_10480030270.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_1070041090.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_17020289530.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_17020289540.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_17020289560.1 Alkaloid TYDC_DDC low borderline
Pcabscaffold_2040401920.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_211_847-14465410421860.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_211_847-14465410421870.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_30340592230.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_30780595800.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_360661690.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_3940697920.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_3940697930.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_3_1-26455000709940.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_4430751910.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_4430751920.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_4430751930.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_4590762920.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_4_1-9001310799340.1 Alkaloid TYDC_DDC low borderline
Pcabscaffold_5400842720.1 Alkaloid TYDC_DDC low borderline
Pcabscaffold_5400842810.1 Alkaloid TYDC_DDC low borderline
Pcabscaffold_540842340.1 Alkaloid TYDC_DDC low borderline
Pcabscaffold_542_228868-7116370843700.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_5430844560.1 Alkaloid TYDC_DDC medium borderline
Pcabscaffold_6740930420.1 Alkaloid TYDC_DDC medium borderline