Pogostemon cablin (pogostemon_cablin)
Imported from atlas release summary for Pogostemon cablin.
5906
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5906
Candidate Genes
C4H
7.21%
C3'H/CYP98A
6.11%
BAHD
4.9%
UGT
4.66%
CYP76
4.63%
7DLGT
3.94%
IFS
3.47%
UFGT
3.36%
Other Families
61.73%
More Families (97)
T3O
526
3.28%
4CL
471
2.94%
POD
448
2.79%
F3'H/CYP75B
435
2.71%
DWF4/CYP90B1
389
2.42%
BR6OX2/CYP85A2
333
2.08%
BBE
326
2.03%
TPS
291
1.81%
F3H
271
1.69%
NMT
250
1.56%
CYP71
250
1.56%
GES
238
1.48%
STR
237
1.48%
CAD
197
1.23%
G8O/G8H
189
1.18%
CYP90D1
187
1.17%
TRI/TRII
184
1.15%
T16H
169
1.05%
CODM/T6ODM
167
1.04%
PYKS
163
1.02%
SMT1/SMT2/SMT3
154
0.96%
IO
151
0.94%
HCT
150
0.93%
RAS
150
0.93%
CAS
148
0.92%
IFR
144
0.9%
H6H
141
0.88%
LAC
137
0.85%
7DLH
135
0.84%
F5H/CYP84A
134
0.84%
COMT
134
0.84%
PAL
132
0.82%
F3'5'H/CYP75A
128
0.8%
CSE
124
0.77%
GS
115
0.72%
FNS
102
0.64%
CPD/CYP90A1
98
0.61%
16OMT
93
0.58%
PMT
88
0.55%
SLS
82
0.51%
SGD
77
0.48%
ANR
74
0.46%
TAT
74
0.46%
COR
70
0.44%
CHS
67
0.42%
NCS
62
0.39%
FPPS
55
0.34%
CNMT
54
0.34%
CYP51G1
53
0.33%
LAMT
50
0.31%
ROT3/CYP90C1
45
0.28%
AACT
44
0.27%
CYP80B1
43
0.27%
MPO
42
0.26%
CCR
42
0.26%
DXS
42
0.26%
BR6OX1/CYP85A1
41
0.26%
GGPPS
40
0.25%
8HGO
39
0.24%
ANS/LDOX
38
0.24%
DFR
36
0.22%
ISY
34
0.21%
CCoAOMT
34
0.21%
6OMT_4OMT_SOMT
30
0.19%
SMO1/SMO2
28
0.17%
SQE
27
0.17%
CYP719
26
0.16%
CPR
26
0.16%
TYDC_DDC
25
0.16%
SQS/FDFT1
25
0.16%
HMGR
23
0.14%
MVK
22
0.14%
HPPR
20
0.12%
TDC
18
0.11%
CHI
17
0.11%
DET2
16
0.1%
MDS/IspF
15
0.09%
CYP80F1
14
0.09%
MVD
14
0.09%
HDS/IspG
12
0.07%
HDR/IspH
12
0.07%
MCT/IspD
12
0.07%
CMK/IspE
12
0.07%
FK
11
0.07%
ADC
10
0.06%
FLS
10
0.06%
DXR
10
0.06%
HYD1
9
0.06%
IDI
8
0.05%
DWF5
6
0.04%
CPI1
5
0.03%
DWF1
5
0.03%
XMT_MXMT_DXMT
4
0.02%
DWF7
4
0.02%
GPPS
4
0.02%
PMK
4
0.02%
HMGS
3
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1976 | 22 | UGT (631) | View species results |
| Alkaloid pathway | 1266 | 28 | 7DLGT (238) | View species results |
| Phenylpropanoid pathway | 1078 | 13 | POD (387) | View species results |
| Flavonoid pathway | 742 | 15 | UFGT (453) | View species results |
| Rosmarinic acid pathway | 534 | 7 | C4H (262) | View species results |
| Steroid pathway | 310 | 16 | CAS (110) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 6862 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1086 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcabscaffold_18790340990.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_18790341000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_18790341010.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_1900349480.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_1900349490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_190346530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_190346750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_190346840.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_190346860.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_190347190.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_190347210.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Pcabscaffold_190347290.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_190347320.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_190347480.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_190348140.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Pcabscaffold_19270355440.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_1990371550.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Pcabscaffold_1990371880.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Pcabscaffold_1_1017389-68718490377180.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Pcabscaffold_1_1017389-68718490378420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_20370400450.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_20383420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_20383920.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_2040401440.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_2040401450.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_21050418640.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_2140426750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_21580429630.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Pcabscaffold_21690432070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_21790434530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Pcabscaffold_2230446670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_2260453210.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_2260453720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_230461030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_2310468170.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_23560475290.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_2380479040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Pcabscaffold_25750511420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_26270523720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Pcabscaffold_271660542840.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_2750549710.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_27550550070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Pcabscaffold_27690551440.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Pcabscaffold_27900553990.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_2840559220.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_2840559230.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Pcabscaffold_29690579420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Pcabscaffold_29820581220.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_30250591440.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Pcabscaffold_30890597080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |