PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA35323 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35416 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA35542 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA35657 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA35658 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA35659 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA36211 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA36216 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA36926 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA37429 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA37627 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38178 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38195 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA38289 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38375 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA38449 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA38956 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38957 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38958 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38959 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38960 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38962 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38963 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38964 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38965 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38966 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38967 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA38969 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA39414 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA39415 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA39416 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA40364 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA40377 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA40480 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA40659 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA41138 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA4153 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA41809 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA41811 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA41852 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA41853 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA42325 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA42972 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA42995 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA43015 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA43016 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA43017 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA43018 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA43058 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA43059 Flavonoid IFS medium borderline