PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA16066 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16163 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16165 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16166 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16167 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16230 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16338 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA16339 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17032 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17033 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17034 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17036 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17037 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17348 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17469 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA17565 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA18410 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA18557 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA18612 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19208 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19209 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19213 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19216 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19217 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19218 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19219 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19737 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19812 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19872 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19873 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19942 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA19966 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA20005 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA20007 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA20422 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA20425 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA21492 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA22261 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA22279 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA22602 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA22813 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA23359 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA23430 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA23561 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA23637 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24465 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24466 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24468 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24469 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24470 Steroid DWF4/CYP90B1 low borderline