PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA24495 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA24569 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA24735 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA24736 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA24737 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA24739 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA25216 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA25296 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA25991 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA25993 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA26290 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA26963 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA26968 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA27011 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA28137 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA28157 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA28158 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA28159 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA2827 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA28770 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA2882 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA2946 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA29837 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30346 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30530 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30549 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30554 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30625 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30640 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA31226 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA31531 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA31989 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32037 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32098 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA32509 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32510 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32660 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32663 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32764 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA32839 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA33302 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA33892 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA33927 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA34009 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA34498 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA35143 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA35250 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA35318 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA35320 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA35322 Steroid DWF4/CYP90B1 low borderline