PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA41599 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA41713 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA46250 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA46875 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA47680 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA48587 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA48869 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA48871 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA49613 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA50331 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA50332 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA50334 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA50335 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA51665 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA51820 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA52520 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA52625 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA52626 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA52876 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA54080 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA54183 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA55491 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA55493 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA55494 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA56389 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA57244 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA57245 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA58319 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA58922 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA58923 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA58924 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA58926 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA59564 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA59566 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA60818 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA60820 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA60821 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA60822 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA60824 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA61444 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA61445 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA61446 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA61447 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA61957 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA63371 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA64186 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA64188 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA65082 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA65083 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA65085 Alkaloid 16OMT medium borderline