PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA66398 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67335 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67336 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67341 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67342 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67351 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67352 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA67863 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA68728 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA68729 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA68730 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA68733 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA69030 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA70982 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA71148 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA71316 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA72095 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA72199 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA72201 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA76488 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA76653 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA77109 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA78797 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA79152 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA79155 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA79859 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA79925 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA79926 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA80038 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA81335 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA81539 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA82245 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA82247 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA82248 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA82250 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA82251 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA83081 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA83082 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA83790 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA83792 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA84149 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA85824 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA8594 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA86282 Alkaloid 16OMT low borderline
rhynchospora_pubera_mRNA86443 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA86444 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA90895 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA90896 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA90897 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA91010 Alkaloid 16OMT low borderline