PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA9785 Alkaloid 16OMT medium borderline
rhynchospora_pubera_mRNA49612 Alkaloid 6OMT_4OMT_SOMT low borderline
rhynchospora_pubera_mRNA59565 Alkaloid 6OMT_4OMT_SOMT medium borderline
rhynchospora_pubera_mRNA9786 Alkaloid 6OMT_4OMT_SOMT medium borderline
rhynchospora_pubera_mRNA10184 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA1060 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA12565 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA13197 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA13315 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA13428 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA14080 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA14448 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA14524 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA14892 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA14895 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA15737 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA16584 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA16585 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA17141 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA18219 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18239 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18259 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18260 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18261 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18387 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18388 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18389 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18390 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18411 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18433 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA18480 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA18481 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA18523 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18553 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18694 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18932 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA18933 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18934 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18935 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA18936 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19038 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19039 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19120 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19263 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19264 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19266 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19267 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19268 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19269 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19293 Alkaloid 7DLGT low borderline