PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA19295 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19296 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19340 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19341 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19342 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19343 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19344 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19345 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19346 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19347 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19683 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA19685 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19687 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19829 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19947 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA19956 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA20067 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA20069 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA20440 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA20952 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA21271 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21272 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21273 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21277 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21278 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA21280 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA21281 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21289 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA21302 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21303 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21532 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21535 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21947 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21948 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA21993 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA22034 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA22035 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA22179 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA22482 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA22483 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA22587 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA22800 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA22970 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA23077 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA23649 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24048 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA24049 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA24400 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA24401 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA24402 Alkaloid 7DLGT medium pass