PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA30164 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA31401 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA31984 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA31985 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA32021 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA3283 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA33706 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA34093 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA34095 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA35214 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA35215 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA35216 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA35217 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA36547 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA37243 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA38084 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA38085 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA38998 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA39001 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA40286 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA40392 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA41713 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA46250 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA46836 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA46875 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA47680 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA48587 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA48869 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA48871 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA49612 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA49613 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA49614 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA50331 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA50332 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA50335 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA51665 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA51820 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA52520 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA52625 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA52626 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA52876 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA54080 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA54183 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA55491 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA55493 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA55494 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA56389 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA57244 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA57245 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA58922 Phenylpropanoid COMT medium pass