PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA58923 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA58924 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA58926 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA59564 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA59565 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA59566 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA60818 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA60820 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA60821 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA60822 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA60824 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA61444 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA61445 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA61446 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA61447 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA61957 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA62685 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA63371 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA64186 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA64188 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65082 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65083 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA65085 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA66398 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67335 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67336 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67341 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67342 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67351 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67352 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA67863 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA67864 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA68102 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68728 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68729 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA68730 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA68733 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA69030 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA70824 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA70982 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA71148 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA71316 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA72199 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA72201 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA76488 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA77109 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA78797 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA79152 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA79155 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA79859 Phenylpropanoid COMT medium pass