PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA79925 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA79926 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA80038 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA80556 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA81335 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA81539 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82245 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA82247 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82248 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA82250 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA82251 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA83080 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA83081 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83082 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83790 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA83792 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA84149 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA85824 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA8594 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA86444 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA90895 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA90896 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA90897 Phenylpropanoid COMT medium pass
rhynchospora_pubera_mRNA9785 Phenylpropanoid COMT low borderline
rhynchospora_pubera_mRNA1321 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA1335 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA13645 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA14095 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA14686 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA17179 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA17180 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA17354 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA17355 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA17773 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA18029 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA18125 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA18305 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA20312 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA20313 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA20314 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA20838 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA21297 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA21298 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA21299 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA21300 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA21951 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA22293 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA22294 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA22503 Phenylpropanoid CSE medium pass
rhynchospora_pubera_mRNA22629 Phenylpropanoid CSE medium pass