PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA22631 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA23318 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA25253 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA25965 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA25973 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA26359 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA26773 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA27199 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA27443 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA28935 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA29257 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA29984 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30289 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30290 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA30335 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31495 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31527 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA31589 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA33104 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA33905 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA34141 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA34610 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA36672 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA36862 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA36964 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA37868 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA37869 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA37870 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39564 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39565 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA39566 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA40468 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40469 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40470 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40471 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA40988 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA41179 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA41180 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA42051 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA42295 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA43790 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA44115 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45134 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45135 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA45176 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46316 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46340 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46379 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
rhynchospora_pubera_mRNA46439 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
rhynchospora_pubera_mRNA47982 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH