PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA45772 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA45985 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA45989 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA45992 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA46065 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA46779 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47042 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47225 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47243 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47371 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47374 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47519 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47624 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47751 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA47923 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA48312 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA50305 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA50325 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA50413 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA51422 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA52248 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA52250 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA52251 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA52931 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA53358 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA53854 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA54103 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA54125 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55040 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55478 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55519 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55527 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55529 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA55533 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA56117 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA56118 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA56197 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA56272 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA56274 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA57195 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA57242 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA57579 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA58186 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA5846 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA58496 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA58497 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA58731 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA58826 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59067 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59084 Steroid BR6OX2/CYP85A2 low borderline