PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA59086 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59550 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59954 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59956 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA59959 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60005 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60006 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60378 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60426 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60428 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA60836 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61295 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61297 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61304 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61634 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61784 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA61785 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA62092 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA62353 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA62877 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA63059 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA63373 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA63420 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA64297 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA64371 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA65051 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA65055 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA65058 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA65518 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA66465 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA66686 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA67218 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA68583 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA68634 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA68738 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA68995 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA69720 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA69806 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA70557 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA71621 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA71638 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72282 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72284 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72285 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72290 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72327 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72721 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA72861 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA73316 Steroid BR6OX2/CYP85A2 medium borderline
rhynchospora_pubera_mRNA73452 Steroid BR6OX2/CYP85A2 low borderline