PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA73475 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA73515 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA73516 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA74198 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75173 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75392 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75393 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75438 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75500 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA75710 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA76033 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA76244 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA76248 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77019 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77276 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77469 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77600 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77602 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77744 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77852 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA77976 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA78152 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA80292 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA80293 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA81076 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA81984 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA82239 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA82331 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA82389 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA84421 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA84781 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA84954 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85089 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85337 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85339 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85468 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85481 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85654 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA85918 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA86308 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA86676 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA86678 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA86682 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA86901 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87191 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87413 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87521 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87522 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87738 Steroid BR6OX2/CYP85A2 low borderline
rhynchospora_pubera_mRNA87739 Steroid BR6OX2/CYP85A2 low borderline