PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA52688 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA52689 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA52816 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA53190 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA53742 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA53998 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA55228 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA55229 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA55330 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA55457 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA55572 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA55881 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA56388 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA56989 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57395 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57396 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57397 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57398 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57399 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57400 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57401 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA57686 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA58068 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA58336 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA58337 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA58523 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA58592 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA59041 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA5926 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA59773 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA59844 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA59845 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA59846 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA59847 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA60529 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA60530 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA60531 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA60532 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA60609 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA61331 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA61690 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA61756 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA61941 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA61942 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA61943 Alkaloid PYKS medium pass
rhynchospora_pubera_mRNA61944 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA62207 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA62937 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA62955 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA63219 Alkaloid PYKS high pass