PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA63220 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA63221 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA63222 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA63608 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA64187 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA64601 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA65008 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA65123 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA65322 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA65323 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA65324 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA66565 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA67099 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA67334 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA67340 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA67348 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA67350 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA70211 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA70713 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA71149 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA71150 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA71259 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA71649 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA72872 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA7418 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA74394 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA75452 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA75558 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA75613 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA76111 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA76362 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA76463 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA76631 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA76633 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA77696 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA77884 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA78090 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA78350 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA78371 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA78751 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA79736 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA79856 Alkaloid PYKS medium pass
rhynchospora_pubera_mRNA79857 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA79858 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA79924 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA80154 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA80444 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA81628 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA83825 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA84199 Alkaloid PYKS low borderline