PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA84516 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA84568 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA84569 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA84588 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA84685 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA84835 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA85052 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA85239 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA86301 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA86302 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA86303 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA86471 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA86572 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA86825 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA87305 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA87306 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA87354 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA87461 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA88513 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA90253 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA9346 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA13196 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA1320 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA17189 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA17190 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA17191 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA17192 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA1815 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA20052 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA20053 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA20261 Alkaloid SGD low borderline
rhynchospora_pubera_mRNA22795 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA22979 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA2344 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA2345 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA2346 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA23765 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA23766 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA23767 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA24745 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA24746 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA24747 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA24748 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA25722 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA25724 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA25726 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA25727 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA27791 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA27792 Alkaloid SGD medium pass
rhynchospora_pubera_mRNA28079 Alkaloid SGD medium pass