PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA46589 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA46683 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA47283 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA47836 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA47837 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA49050 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA49240 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA49245 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA49396 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA49875 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA50394 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA50870 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA55558 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA57710 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA62269 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA67486 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA67492 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA67657 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA679 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA68136 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA68659 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA69170 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA71605 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA73376 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA73711 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA73948 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA75418 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA75809 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76810 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76811 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76812 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76813 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76814 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76815 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76816 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76817 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76819 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76820 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA76923 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA77497 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA77510 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA78062 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA79314 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA81847 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA82310 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA82312 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA82812 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA83291 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA83446 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA83452 Flavonoid ANR low borderline