PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA83654 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA84872 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA85426 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA85427 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86015 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86112 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86113 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86114 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86115 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86117 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA86840 Flavonoid ANR medium pass
rhynchospora_pubera_mRNA87125 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA87494 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA89168 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA89746 Flavonoid ANR low borderline
rhynchospora_pubera_mRNA955 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA956 Flavonoid ANR medium borderline
rhynchospora_pubera_mRNA15070 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA19158 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA23627 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA24443 Flavonoid ANS/LDOX medium pass
rhynchospora_pubera_mRNA24833 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA39025 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA50550 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA51715 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA51864 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA55468 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA59748 Flavonoid ANS/LDOX medium pass
rhynchospora_pubera_mRNA59749 Flavonoid ANS/LDOX low borderline
rhynchospora_pubera_mRNA60634 Flavonoid ANS/LDOX low borderline
rhynchospora_pubera_mRNA60635 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA65110 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA68986 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA69778 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA69781 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA69785 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA70014 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA70160 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA77428 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA81144 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA81383 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA81578 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA81993 Flavonoid ANS/LDOX medium borderline
rhynchospora_pubera_mRNA17324 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA17685 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA19210 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA19400 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA19414 Flavonoid C4H low borderline
rhynchospora_pubera_mRNA21175 Flavonoid C4H medium borderline
rhynchospora_pubera_mRNA30078 Flavonoid C4H medium borderline