PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold21320194860 Rosmarinic Acid C4H low borderline
Csimscaffold21600197560 Rosmarinic Acid C4H low borderline
Csimscaffold21600197580 Rosmarinic Acid C4H low borderline
Csimscaffold21610197630 Rosmarinic Acid C4H medium pass
Csimscaffold21760198910 Rosmarinic Acid C4H low borderline
Csimscaffold21760198930 Rosmarinic Acid C4H low borderline
Csimscaffold21760198940 Rosmarinic Acid C4H low borderline
Csimscaffold22030202370 Rosmarinic Acid C4H low borderline
Csimscaffold22030202380 Rosmarinic Acid C4H medium pass
Csimscaffold22250204530 Rosmarinic Acid C4H low borderline
Csimscaffold22300205170 Rosmarinic Acid C4H low borderline
Csimscaffold22300205180 Rosmarinic Acid C4H medium pass
Csimscaffold22300205190 Rosmarinic Acid C4H low borderline
Csimscaffold22530207470 Rosmarinic Acid C4H low borderline
Csimscaffold2280209860 Rosmarinic Acid C4H medium pass
Csimscaffold22870210390 Rosmarinic Acid C4H medium pass
Csimscaffold22870210400 Rosmarinic Acid C4H low borderline
Csimscaffold2330216030 Rosmarinic Acid C4H low borderline
Csimscaffold23700220060 Rosmarinic Acid C4H medium pass
Csimscaffold2380221010 Rosmarinic Acid C4H low borderline
Csimscaffold2400223800 Rosmarinic Acid C4H medium pass
Csimscaffold24120225100 Rosmarinic Acid C4H low borderline
Csimscaffold24870231610 Rosmarinic Acid C4H low borderline
Csimscaffold2500233300 Rosmarinic Acid C4H medium pass
Csimscaffold2500233310 Rosmarinic Acid C4H medium pass
Csimscaffold2500233320 Rosmarinic Acid C4H medium pass
Csimscaffold25110234400 Rosmarinic Acid C4H low borderline
Csimscaffold26670248400 Rosmarinic Acid C4H low borderline
Csimscaffold2750256690 Rosmarinic Acid C4H low borderline
Csimscaffold2760257200 Rosmarinic Acid C4H low borderline
Csimscaffold27940259690 Rosmarinic Acid C4H low borderline
Csimscaffold280259940 Rosmarinic Acid C4H low borderline
Csimscaffold28280263120 Rosmarinic Acid C4H low borderline
Csimscaffold28280263130 Rosmarinic Acid C4H low borderline
Csimscaffold28560265050 Rosmarinic Acid C4H low borderline
Csimscaffold28930267520 Rosmarinic Acid C4H low borderline
Csimscaffold28930267540 Rosmarinic Acid C4H medium pass
Csimscaffold290267970 Rosmarinic Acid C4H low borderline
Csimscaffold29450271940 Rosmarinic Acid C4H low borderline
Csimscaffold29610273130 Rosmarinic Acid C4H medium pass
Csimscaffold29810274670 Rosmarinic Acid C4H low borderline
Csimscaffold29980275430 Rosmarinic Acid C4H low borderline
Csimscaffold3000277490 Rosmarinic Acid C4H low borderline
Csimscaffold300277000 Rosmarinic Acid C4H low borderline
Csimscaffold30650281380 Rosmarinic Acid C4H low borderline
Csimscaffold30650281390 Rosmarinic Acid C4H low borderline
Csimscaffold3070281710 Rosmarinic Acid C4H low borderline
Csimscaffold31040284680 Rosmarinic Acid C4H medium pass
Csimscaffold31510287370 Rosmarinic Acid C4H low borderline
Csimscaffold31510287380 Rosmarinic Acid C4H low borderline