PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1501
Candidate Protein Records
1315
Pathway-Level Records
3311
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lsic09G0004230.1 Alkaloid NMT low borderline
Lsic09G0008500.1 Alkaloid NMT medium pass
Lsic09G0009730.1 Alkaloid NMT low borderline
Lsic09G0010660.1 Alkaloid NMT low borderline
Lsic09G0012050.1 Alkaloid NMT medium borderline
Lsic09G0012110.1 Alkaloid NMT medium borderline
Lsic09G0012130.1 Alkaloid NMT medium borderline
Lsic09G0012140.1 Alkaloid NMT medium borderline
Lsic09G0014290.1 Alkaloid NMT low borderline
Lsic09G0017960.1 Alkaloid NMT medium pass
Lsic09G0018190.1 Alkaloid NMT low borderline
Lsic10G0001530.1 Alkaloid NMT medium pass
Lsic10G0002240.1 Alkaloid NMT medium borderline
Lsic10G0005270.1 Alkaloid NMT medium pass
Lsic10G0007150.1 Alkaloid NMT medium pass
Lsic10G0012170.1 Alkaloid NMT low borderline
Lsic10G0012320.1 Alkaloid NMT low borderline
Lsic11G0000440.1 Alkaloid NMT low borderline
Lsic11G0008940.1 Alkaloid NMT medium pass
Lsic11G0009910.1 Alkaloid NMT low borderline
Lsic11G0014840.1 Alkaloid NMT medium pass
Lsic08G0001040.1 Alkaloid ODC low borderline
Lsic08G0012860.1 Alkaloid ODC medium pass
Lsic08G0012870.1 Alkaloid ODC medium pass
Lsic08G0012880.1 Alkaloid ODC medium pass
Lsic02G0003590.1 Alkaloid PMT medium borderline
Lsic02G0026590.1 Alkaloid PMT low borderline
Lsic02G0026610.1 Alkaloid PMT low borderline
Lsic04G0005350.1 Alkaloid PMT medium borderline
Lsic04G0007240.1 Alkaloid PMT medium pass
Lsic04G0016990.1 Alkaloid PMT low borderline
Lsic05G0000860.1 Alkaloid PMT medium borderline
Lsic05G0014270.1 Alkaloid PMT medium pass
Lsic05G0015290.1 Alkaloid PMT low borderline
Lsic06G0015420.1 Alkaloid PMT medium borderline
Lsic06G0016580.1 Alkaloid PMT low borderline
Lsic08G0008360.1 Alkaloid PMT low borderline
Lsic08G0013730.1 Alkaloid PMT low borderline
Lsic09G0000280.1 Alkaloid PMT medium borderline
Lsic10G0001950.1 Alkaloid PMT low borderline
Lsic10G0001960.1 Alkaloid PMT medium pass
Lsic10G0001990.1 Alkaloid PMT medium pass
Lsic10G0002000.1 Alkaloid PMT low borderline
Lsic10G0002030.1 Alkaloid PMT medium pass
Lsic10G0002040.1 Alkaloid PMT low borderline
Lsic10G0002050.1 Alkaloid PMT medium pass
Lsic11G0001660.1 Alkaloid PMT medium pass
Lsic02G0013760.1 Alkaloid PYKS low borderline
Lsic03G0013140.1 Alkaloid PYKS low borderline
Lsic04G0002550.1 Alkaloid PYKS low borderline