PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Lsic02G0012420.1 Alkaloid 7DLGT low borderline
Lsic02G0013190.1 Alkaloid 7DLGT low borderline
Lsic02G0013210.1 Alkaloid 7DLGT high pass
Lsic02G0013220.1 Alkaloid 7DLGT high pass
Lsic02G0015070.1 Alkaloid 7DLGT low borderline
Lsic02G0015090.1 Alkaloid 7DLGT low borderline
Lsic03G0001650.1 Alkaloid 7DLGT medium pass
Lsic03G0001680.1 Alkaloid 7DLGT medium pass
Lsic03G0003410.1 Alkaloid 7DLGT medium pass
Lsic03G0005070.1 Alkaloid 7DLGT medium pass
Lsic03G0005080.1 Alkaloid 7DLGT low borderline
Lsic03G0005090.1 Alkaloid 7DLGT medium pass
Lsic03G0005100.1 Alkaloid 7DLGT low borderline
Lsic03G0005110.1 Alkaloid 7DLGT medium pass
Lsic03G0005340.1 Alkaloid 7DLGT low borderline
Lsic03G0005350.1 Alkaloid 7DLGT low borderline
Lsic03G0005360.1 Alkaloid 7DLGT medium pass
Lsic03G0005370.1 Alkaloid 7DLGT low borderline
Lsic03G0005380.1 Alkaloid 7DLGT low borderline
Lsic03G0005390.1 Alkaloid 7DLGT low borderline
Lsic03G0007490.1 Alkaloid 7DLGT medium pass
Lsic03G0007500.1 Alkaloid 7DLGT medium pass
Lsic03G0007510.1 Alkaloid 7DLGT high pass
Lsic03G0007520.1 Alkaloid 7DLGT medium pass
Lsic03G0007530.1 Alkaloid 7DLGT medium pass
Lsic03G0007540.1 Alkaloid 7DLGT medium pass
Lsic03G0007550.1 Alkaloid 7DLGT medium pass
Lsic03G0007900.1 Alkaloid 7DLGT high pass
Lsic03G0007910.1 Alkaloid 7DLGT high pass
Lsic03G0007960.1 Alkaloid 7DLGT high pass
Lsic03G0008210.1 Alkaloid 7DLGT low borderline
Lsic03G0008220.1 Alkaloid 7DLGT low borderline
Lsic03G0008230.1 Alkaloid 7DLGT low borderline
Lsic03G0008280.1 Alkaloid 7DLGT low borderline
Lsic03G0008290.1 Alkaloid 7DLGT low borderline
Lsic03G0008330.1 Alkaloid 7DLGT medium pass
Lsic03G0008360.1 Alkaloid 7DLGT low borderline
Lsic03G0008370.1 Alkaloid 7DLGT high pass
Lsic03G0008380.1 Alkaloid 7DLGT medium pass
Lsic03G0008410.1 Alkaloid 7DLGT low borderline
Lsic03G0008420.1 Alkaloid 7DLGT low borderline
Lsic03G0008430.1 Alkaloid 7DLGT low borderline
Lsic03G0008460.1 Alkaloid 7DLGT low borderline
Lsic03G0008830.1 Alkaloid 7DLGT high pass
Lsic03G0019720.1 Alkaloid 7DLGT low borderline
Lsic03G0019730.1 Alkaloid 7DLGT low borderline
Lsic03G0019740.1 Alkaloid 7DLGT low borderline
Lsic03G0019750.1 Alkaloid 7DLGT medium pass
Lsic03G0019760.1 Alkaloid 7DLGT medium pass
Lsic03G0019770.1 Alkaloid 7DLGT medium pass