PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Lsic03G0019780.1 Alkaloid 7DLGT medium pass
Lsic03G0019790.1 Alkaloid 7DLGT medium pass
Lsic04G0001340.1 Alkaloid 7DLGT low borderline
Lsic04G0001350.1 Alkaloid 7DLGT low borderline
Lsic04G0001360.1 Alkaloid 7DLGT low borderline
Lsic04G0003350.1 Alkaloid 7DLGT low borderline
Lsic04G0003360.1 Alkaloid 7DLGT medium pass
Lsic04G0003390.1 Alkaloid 7DLGT low borderline
Lsic04G0003790.1 Alkaloid 7DLGT low borderline
Lsic04G0009310.1 Alkaloid 7DLGT medium pass
Lsic04G0009330.1 Alkaloid 7DLGT medium pass
Lsic04G0009400.1 Alkaloid 7DLGT high pass
Lsic04G0009410.1 Alkaloid 7DLGT high pass
Lsic04G0019190.1 Alkaloid 7DLGT low borderline
Lsic04G0019280.1 Alkaloid 7DLGT medium pass
Lsic04G0019290.1 Alkaloid 7DLGT low borderline
Lsic04G0019300.1 Alkaloid 7DLGT medium pass
Lsic04G0019330.1 Alkaloid 7DLGT low borderline
Lsic04G0019340.1 Alkaloid 7DLGT low borderline
Lsic04G0019350.1 Alkaloid 7DLGT low borderline
Lsic04G0019370.1 Alkaloid 7DLGT medium pass
Lsic04G0019380.1 Alkaloid 7DLGT low borderline
Lsic04G0019430.1 Alkaloid 7DLGT medium pass
Lsic04G0022010.1 Alkaloid 7DLGT medium pass
Lsic04G0022400.1 Alkaloid 7DLGT medium pass
Lsic04G0022870.1 Alkaloid 7DLGT low borderline
Lsic05G0001340.1 Alkaloid 7DLGT low borderline
Lsic05G0002280.1 Alkaloid 7DLGT low borderline
Lsic05G0007890.1 Alkaloid 7DLGT low borderline
Lsic05G0007900.1 Alkaloid 7DLGT low borderline
Lsic05G0011460.1 Alkaloid 7DLGT low borderline
Lsic05G0011470.1 Alkaloid 7DLGT low borderline
Lsic05G0011480.1 Alkaloid 7DLGT low borderline
Lsic05G0013580.1 Alkaloid 7DLGT high pass
Lsic05G0020550.1 Alkaloid 7DLGT low borderline
Lsic05G0020560.1 Alkaloid 7DLGT low borderline
Lsic05G0021050.1 Alkaloid 7DLGT medium pass
Lsic05G0021060.1 Alkaloid 7DLGT low borderline
Lsic06G0011150.1 Alkaloid 7DLGT low borderline
Lsic07G0000870.1 Alkaloid 7DLGT low borderline
Lsic07G0001930.1 Alkaloid 7DLGT high pass
Lsic07G0009240.1 Alkaloid 7DLGT low borderline
Lsic08G0008770.1 Alkaloid 7DLGT low borderline
Lsic09G0016090.1 Alkaloid 7DLGT medium pass
Lsic09G0016170.1 Alkaloid 7DLGT medium pass
Lsic09G0016180.1 Alkaloid 7DLGT medium pass
Lsic09G0016200.1 Alkaloid 7DLGT medium pass
Lsic09G0016210.1 Alkaloid 7DLGT low borderline
Lsic10G0001790.1 Alkaloid 7DLGT medium pass
Lsic10G0001800.1 Alkaloid 7DLGT medium pass