PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold460279850.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold4620284820.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold4640288360.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold5000305240.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold5050305800.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold5240312000.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold570323140.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold6740356990.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold7310367690.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold7340368840.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold7650378310.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold7830382210.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold7830384150.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold800386860.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold8120388500.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold860398170.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold860398190.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold8980408180.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold8980408270.1 Alkaloid CODM/T6ODM low borderline
Lusiscaffold9240421630.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422770.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422780.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422790.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422830.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422840.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9310422850.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold960425910.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9700428120.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold9770430080.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold980431740.1 Alkaloid CODM/T6ODM medium borderline
Lusiscaffold10350007220.1 Alkaloid COR medium pass
Lusiscaffold1230036110.1 Alkaloid COR medium pass
Lusiscaffold160084520.1 Alkaloid COR medium pass
Lusiscaffold160084550.1 Alkaloid COR medium pass
Lusiscaffold160084560.1 Alkaloid COR medium pass
Lusiscaffold1670091910.1 Alkaloid COR medium pass
Lusiscaffold19890112220.1 Alkaloid COR medium pass
Lusiscaffold2610153300.1 Alkaloid COR medium pass
Lusiscaffold330217700.1 Alkaloid COR low borderline
Lusiscaffold3760250630.1 Alkaloid COR medium pass
Lusiscaffold4400276770.1 Alkaloid COR medium pass
Lusiscaffold4400276780.1 Alkaloid COR medium pass
Lusiscaffold4720291970.1 Alkaloid COR medium pass
Lusiscaffold6120338080.1 Alkaloid COR medium pass
Lusiscaffold6870359180.1 Alkaloid COR medium pass
Lusiscaffold7830382890.1 Alkaloid COR medium pass
Lusiscaffold860395380.1 Alkaloid COR medium pass
Lusiscaffold870405570.1 Alkaloid COR low borderline
Lusiscaffold940424000.1 Alkaloid COR medium pass
Lusiscaffold9770428760.1 Alkaloid COR medium pass