PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold9060415130.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold960425890.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426170.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426220.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold960426720.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold970427840.1 Steroid DWF4/CYP90B1 low borderline
Lusiscaffold9770430090.1 Steroid DWF4/CYP90B1 medium borderline
Lusiscaffold1230039460.1 Steroid DWF5 low borderline
Lusiscaffold4620284990.1 Steroid DWF5 medium pass
Lusiscaffold4640288570.1 Steroid DWF5 medium borderline
Lusiscaffold4880301670.1 Steroid DWF5 medium pass
Lusiscaffold660350910.1 Steroid DWF5 medium pass
Lusiscaffold15360074640.1 Steroid DWF7 medium pass
Lusiscaffold4130259080.1 Steroid DWF7 medium pass
Lusiscaffold10680010510.1 Steroid FK high pass
Lusiscaffold1320050200.1 Steroid HYD1 high pass
Lusiscaffold440275550.1 Steroid HYD1 low borderline
Lusiscaffold4800299360.1 Steroid HYD1 medium pass
Lusiscaffold510308290.1 Steroid HYD1 high pass
Lusiscaffold6350344620.1 Steroid HYD1 high pass
Lusiscaffold6410346220.1 Steroid HYD1 low borderline
Lusiscaffold9110417270.1 Steroid HYD1 low borderline
Lusiscaffold1030005920.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold13110047610.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold1590083180.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold160083740.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold250146250.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold2720161740.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold2750165010.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold2800174590.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3190210160.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3190210170.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold3460229140.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold350232650.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold3760249550.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold3910255640.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold4130257550.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold570322440.1 Steroid ROT3/CYP90C1 low borderline
Lusiscaffold7510372390.1 Steroid ROT3/CYP90C1 medium borderline
Lusiscaffold11340019020.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold11340019030.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold11340019050.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold1560079700.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold27860166280.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold2790167070.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold2800176480.1 Steroid SMO1/SMO2 low borderline
Lusiscaffold2910181680.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold34600230260.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold3490230490.1 Steroid SMO1/SMO2 medium pass
Lusiscaffold5400315490.1 Steroid SMO1/SMO2 medium pass