PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold5150310550.1 Alkaloid G8O/G8H medium pass
Lusiscaffold5400315240.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold570324020.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6300344060.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6410346700.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold6410346760.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold670356590.1 Alkaloid G8O/G8H low borderline
Lusiscaffold6740357060.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7010361210.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7110364630.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold7510372460.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold80385010.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold80386370.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9060415100.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9170419810.1 Alkaloid G8O/G8H medium borderline
Lusiscaffold9770428650.1 Alkaloid G8O/G8H medium borderline
LusiC83798310002200.1 Alkaloid GES medium pass
Lusiscaffold10860013720.1 Alkaloid GES medium pass
Lusiscaffold11340019040.1 Alkaloid GES low borderline
Lusiscaffold120030530.1 Alkaloid GES medium pass
Lusiscaffold1210031910.1 Alkaloid GES medium pass
Lusiscaffold1210031930.1 Alkaloid GES medium pass
Lusiscaffold1230037590.1 Alkaloid GES medium pass
Lusiscaffold1230037610.1 Alkaloid GES medium pass
Lusiscaffold13080046100.1 Alkaloid GES medium pass
Lusiscaffold13080046110.1 Alkaloid GES medium pass
Lusiscaffold13120048000.1 Alkaloid GES low borderline
Lusiscaffold13130048720.1 Alkaloid GES medium pass
Lusiscaffold150068010.1 Alkaloid GES medium pass
Lusiscaffold1560078630.1 Alkaloid GES medium pass
Lusiscaffold16030085570.1 Alkaloid GES medium pass
Lusiscaffold16030085580.1 Alkaloid GES medium pass
Lusiscaffold16030085590.1 Alkaloid GES medium pass
Lusiscaffold1630087240.1 Alkaloid GES medium pass
Lusiscaffold16860092650.1 Alkaloid GES medium pass
Lusiscaffold16860092670.1 Alkaloid GES medium pass
Lusiscaffold16860092680.1 Alkaloid GES medium pass
Lusiscaffold2490141940.1 Alkaloid GES medium pass
Lusiscaffold2490141960.1 Alkaloid GES low borderline
Lusiscaffold2510147980.1 Alkaloid GES medium pass
Lusiscaffold2510148000.1 Alkaloid GES medium pass
Lusiscaffold2520149030.1 Alkaloid GES medium pass
Lusiscaffold280168490.1 Alkaloid GES medium pass
Lusiscaffold280170000.1 Alkaloid GES low borderline
Lusiscaffold2880179930.1 Alkaloid GES medium pass
Lusiscaffold3100203330.1 Alkaloid GES medium pass
Lusiscaffold3100203360.1 Alkaloid GES medium pass
Lusiscaffold3530234640.1 Alkaloid GES medium pass
Lusiscaffold3760248880.1 Alkaloid GES medium pass
Lusiscaffold3760248910.1 Alkaloid GES low borderline