PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold1230039020.1 Terpenoid HDR/IspH high pass
Lusiscaffold3210212810.1 Terpenoid HDR/IspH medium pass
Lusiscaffold860399460.1 Terpenoid HDR/IspH high pass
Lusiscaffold8980409670.1 Terpenoid HDR/IspH high pass
Lusiscaffold2800176240.1 Terpenoid HDS/IspG high pass
Lusiscaffold3100205350.1 Terpenoid HDS/IspG low borderline
Lusiscaffold4620285970.1 Terpenoid HDS/IspG high pass
Lusiscaffold590328530.1 Terpenoid HDS/IspG high pass
Lusiscaffold6120337970.1 Terpenoid HDS/IspG high pass
Lusiscaffold6170339260.1 Terpenoid HMGR medium pass
Lusiscaffold6180341130.1 Terpenoid HMGR medium pass
Lusiscaffold10720012500.1 Terpenoid HMGS high pass
Lusiscaffold24160139920.1 Terpenoid HMGS high pass
Lusiscaffold4540279040.1 Terpenoid IDI medium pass
Lusiscaffold6510347870.1 Terpenoid IDI medium pass
Lusiscaffold11430021030.1 Terpenoid MCT/IspD low borderline
Lusiscaffold1230039570.1 Terpenoid MCT/IspD medium pass
Lusiscaffold4640286790.1 Terpenoid MCT/IspD low borderline
Lusiscaffold8980409160.1 Terpenoid MCT/IspD high pass
Lusiscaffold12530043460.1 Terpenoid MDS/IspF high pass
Lusiscaffold190107180.1 Terpenoid MDS/IspF low borderline
Lusiscaffold5400314000.1 Terpenoid MDS/IspF medium pass
Lusiscaffold14860063540.1 Terpenoid MVD medium pass
Lusiscaffold250147060.1 Terpenoid MVD medium pass
Lusiscaffold2920186380.1 Terpenoid MVD medium pass
Lusiscaffold4880302050.1 Terpenoid MVD low borderline
Lusiscaffold4880302060.1 Terpenoid MVD low borderline
Lusiscaffold5400314960.1 Terpenoid MVD low borderline
Lusiscaffold660351310.1 Terpenoid MVD low borderline
Lusiscaffold660351320.1 Terpenoid MVD low borderline
Lusiscaffold1140019950.1 Terpenoid MVK low borderline
Lusiscaffold1960111290.1 Terpenoid MVK low borderline
Lusiscaffold2160123650.1 Terpenoid MVK low borderline
Lusiscaffold2170125460.1 Terpenoid MVK low borderline
Lusiscaffold28960180160.1 Terpenoid MVK low borderline
Lusiscaffold2910183370.1 Terpenoid MVK low borderline
Lusiscaffold3550235820.1 Terpenoid MVK low borderline
Lusiscaffold8630402300.1 Terpenoid MVK medium pass
Lusiscaffold8660404450.1 Terpenoid MVK medium pass
Lusiscaffold11860027990.1 Terpenoid PMK high pass
Lusiscaffold11860028000.1 Terpenoid PMK high pass
Lusiscaffold9100416150.1 Terpenoid PMK high pass
LusiC83798310002200.1 Terpenoid TPS medium pass
Lusiscaffold10860013720.1 Terpenoid TPS medium pass
Lusiscaffold11340019040.1 Terpenoid TPS medium pass
Lusiscaffold120030530.1 Terpenoid TPS medium pass
Lusiscaffold1210031910.1 Terpenoid TPS medium pass
Lusiscaffold1210031930.1 Terpenoid TPS medium pass
Lusiscaffold1230037590.1 Terpenoid TPS medium pass
Lusiscaffold1230037610.1 Terpenoid TPS medium pass