PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold4750296460.1 Flavonoid 4CL medium pass
Lusiscaffold5470317820.1 Flavonoid 4CL medium pass
Lusiscaffold5720324780.1 Flavonoid 4CL low borderline
Lusiscaffold60332340.1 Flavonoid 4CL low borderline
Lusiscaffold6050334890.1 Flavonoid 4CL medium pass
Lusiscaffold6120337480.1 Flavonoid 4CL medium pass
Lusiscaffold6170339030.1 Flavonoid 4CL medium pass
Lusiscaffold6180340940.1 Flavonoid 4CL medium pass
Lusiscaffold6410346650.1 Flavonoid 4CL low borderline
Lusiscaffold670354440.1 Flavonoid 4CL low borderline
Lusiscaffold6800357460.1 Flavonoid 4CL low borderline
Lusiscaffold760375260.1 Flavonoid 4CL low borderline
Lusiscaffold7680378770.1 Flavonoid 4CL low borderline
Lusiscaffold7720380430.1 Flavonoid 4CL low borderline
Lusiscaffold820390190.1 Flavonoid 4CL medium pass
Lusiscaffold8630400840.1 Flavonoid 4CL medium pass
Lusiscaffold8670405030.1 Flavonoid 4CL low borderline
Lusiscaffold9150418080.1 Flavonoid 4CL medium pass
Lusiscaffold960426690.1 Flavonoid 4CL medium pass
Lusiscaffold960426700.1 Flavonoid 4CL medium pass
Lusiscaffold980430870.1 Flavonoid 4CL low borderline
Lusiscaffold11230017960.1 Flavonoid ANR medium borderline
Lusiscaffold11550023490.1 Flavonoid ANR medium borderline
Lusiscaffold11550023500.1 Flavonoid ANR medium borderline
Lusiscaffold1200030910.1 Flavonoid ANR medium borderline
Lusiscaffold1200030930.1 Flavonoid ANR medium borderline
Lusiscaffold150066830.1 Flavonoid ANR medium borderline
Lusiscaffold16350088730.1 Flavonoid ANR medium borderline
Lusiscaffold16350088740.1 Flavonoid ANR medium borderline
Lusiscaffold1790100790.1 Flavonoid ANR medium borderline
Lusiscaffold1790100800.1 Flavonoid ANR medium borderline
Lusiscaffold2000114830.1 Flavonoid ANR medium borderline
Lusiscaffold20220115500.1 Flavonoid ANR low borderline
Lusiscaffold2040117140.1 Flavonoid ANR medium borderline
Lusiscaffold2040117150.1 Flavonoid ANR low borderline
Lusiscaffold2170125930.1 Flavonoid ANR medium borderline
Lusiscaffold2250131070.1 Flavonoid ANR low borderline
Lusiscaffold230134560.1 Flavonoid ANR medium borderline
Lusiscaffold2720160310.1 Flavonoid ANR medium borderline
Lusiscaffold2720162430.1 Flavonoid ANR low borderline
Lusiscaffold2750165780.1 Flavonoid ANR medium borderline
Lusiscaffold2800173510.1 Flavonoid ANR medium borderline
Lusiscaffold2910183440.1 Flavonoid ANR medium pass
Lusiscaffold2910183450.1 Flavonoid ANR medium pass
Lusiscaffold3190210960.1 Flavonoid ANR medium borderline
Lusiscaffold3190211780.1 Flavonoid ANR medium borderline
Lusiscaffold3250213650.1 Flavonoid ANR medium pass
Lusiscaffold3290217090.1 Flavonoid ANR low borderline
Lusiscaffold3530234120.1 Flavonoid ANR medium borderline
Lusiscaffold3720244680.1 Flavonoid ANR low borderline