PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold3730246180.1 Flavonoid ANR low borderline
Lusiscaffold4200268360.1 Flavonoid ANR medium borderline
Lusiscaffold4200268380.1 Flavonoid ANR medium borderline
Lusiscaffold430269900.1 Flavonoid ANR medium borderline
Lusiscaffold4720293300.1 Flavonoid ANR low borderline
Lusiscaffold550318360.1 Flavonoid ANR medium borderline
Lusiscaffold740369530.1 Flavonoid ANR low borderline
Lusiscaffold8980409180.1 Flavonoid ANR medium borderline
Lusiscaffold1030005300.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold11700026940.1 Flavonoid ANS/LDOX medium pass
Lusiscaffold11700026950.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold140056330.1 Flavonoid ANS/LDOX medium pass
Lusiscaffold1650091550.1 Flavonoid ANS/LDOX medium pass
Lusiscaffold1990112510.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold20112960.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold2250130610.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold2610153250.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold2610154380.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold2800175500.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold3590236810.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold460279850.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold5050305800.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold7340368840.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold800386860.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold9770428640.1 Flavonoid ANS/LDOX medium borderline
Lusiscaffold980431740.1 Flavonoid ANS/LDOX low borderline
Lusiscaffold11400020590.1 Flavonoid C4H medium borderline
Lusiscaffold1830103170.1 Flavonoid C4H medium borderline
Lusiscaffold2080119950.1 Flavonoid C4H medium borderline
Lusiscaffold2920186470.1 Flavonoid C4H medium borderline
Lusiscaffold300191540.1 Flavonoid C4H medium borderline
Lusiscaffold3100205530.1 Flavonoid C4H medium borderline
Lusiscaffold310200660.1 Flavonoid C4H medium borderline
Lusiscaffold310200700.1 Flavonoid C4H medium borderline
Lusiscaffold430269850.1 Flavonoid C4H medium borderline
Lusiscaffold820390110.1 Flavonoid C4H medium borderline
Lusiscaffold1070012010.1 Flavonoid CHI medium pass
Lusiscaffold13130048700.1 Flavonoid CHI medium pass
Lusiscaffold2170126250.1 Flavonoid CHI medium pass
Lusiscaffold2170126260.1 Flavonoid CHI medium pass
Lusiscaffold420266270.1 Flavonoid CHI medium pass
Lusiscaffold7620376970.1 Flavonoid CHI medium pass
Lusiscaffold9170419800.1 Flavonoid CHI medium pass
Lusiscaffold10100004350.1 Flavonoid CHS medium pass
Lusiscaffold1230039450.1 Flavonoid CHS medium pass
Lusiscaffold150069920.1 Flavonoid CHS medium pass
Lusiscaffold2720158870.1 Flavonoid CHS medium pass
Lusiscaffold2720158880.1 Flavonoid CHS medium pass
Lusiscaffold5050306480.1 Flavonoid CHS medium pass
Lusiscaffold5680320740.1 Flavonoid CHS medium pass