PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold1770098830.1 Alkaloid 7DLGT low borderline
Lusiscaffold1770099280.1 Alkaloid 7DLGT low borderline
Lusiscaffold1820102440.1 Alkaloid 7DLGT medium pass
Lusiscaffold1840104260.1 Alkaloid 7DLGT high pass
Lusiscaffold20112940.1 Alkaloid 7DLGT low borderline
Lusiscaffold20113270.1 Alkaloid 7DLGT low borderline
Lusiscaffold2060119100.1 Alkaloid 7DLGT low borderline
Lusiscaffold2080120420.1 Alkaloid 7DLGT low borderline
Lusiscaffold2250130880.1 Alkaloid 7DLGT low borderline
Lusiscaffold2250130890.1 Alkaloid 7DLGT low borderline
Lusiscaffold2250130900.1 Alkaloid 7DLGT low borderline
Lusiscaffold2300135810.1 Alkaloid 7DLGT low borderline
Lusiscaffold230133730.1 Alkaloid 7DLGT low borderline
Lusiscaffold2310136050.1 Alkaloid 7DLGT high pass
Lusiscaffold250147130.1 Alkaloid 7DLGT low borderline
Lusiscaffold2540149680.1 Alkaloid 7DLGT medium pass
Lusiscaffold2540149710.1 Alkaloid 7DLGT medium pass
Lusiscaffold2550149910.1 Alkaloid 7DLGT low borderline
Lusiscaffold2550149920.1 Alkaloid 7DLGT medium pass
Lusiscaffold2590151620.1 Alkaloid 7DLGT medium pass
Lusiscaffold25930151900.1 Alkaloid 7DLGT low borderline
Lusiscaffold2610154520.1 Alkaloid 7DLGT low borderline
Lusiscaffold2690156120.1 Alkaloid 7DLGT medium pass
Lusiscaffold2720160930.1 Alkaloid 7DLGT medium pass
Lusiscaffold2720160950.1 Alkaloid 7DLGT high pass
Lusiscaffold2740164270.1 Alkaloid 7DLGT medium pass
Lusiscaffold2790166740.1 Alkaloid 7DLGT medium pass
Lusiscaffold2790166750.1 Alkaloid 7DLGT high pass
Lusiscaffold2790166760.1 Alkaloid 7DLGT high pass
Lusiscaffold2800173750.1 Alkaloid 7DLGT medium pass
Lusiscaffold280169170.1 Alkaloid 7DLGT low borderline
Lusiscaffold2810177950.1 Alkaloid 7DLGT low borderline
Lusiscaffold28570178570.1 Alkaloid 7DLGT low borderline
Lusiscaffold2860179230.1 Alkaloid 7DLGT high pass
Lusiscaffold2910181930.1 Alkaloid 7DLGT medium pass
Lusiscaffold2910181940.1 Alkaloid 7DLGT medium pass
Lusiscaffold2910181950.1 Alkaloid 7DLGT medium pass
Lusiscaffold29320187520.1 Alkaloid 7DLGT medium pass
Lusiscaffold29320187530.1 Alkaloid 7DLGT medium pass
Lusiscaffold29920190730.1 Alkaloid 7DLGT high pass
Lusiscaffold3080198940.1 Alkaloid 7DLGT low borderline
Lusiscaffold310200870.1 Alkaloid 7DLGT low borderline
Lusiscaffold310200900.1 Alkaloid 7DLGT low borderline
Lusiscaffold310202170.1 Alkaloid 7DLGT low borderline
Lusiscaffold310202190.1 Alkaloid 7DLGT low borderline
Lusiscaffold3170208790.1 Alkaloid 7DLGT high pass
Lusiscaffold330217410.1 Alkaloid 7DLGT low borderline
Lusiscaffold330217810.1 Alkaloid 7DLGT medium pass
Lusiscaffold330218050.1 Alkaloid 7DLGT low borderline
Lusiscaffold330218060.1 Alkaloid 7DLGT low borderline