PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold340225120.1 Alkaloid 7DLGT medium pass
Lusiscaffold340225160.1 Alkaloid 7DLGT low borderline
Lusiscaffold3440227660.1 Alkaloid 7DLGT medium pass
Lusiscaffold3440227670.1 Alkaloid 7DLGT medium pass
Lusiscaffold3440227680.1 Alkaloid 7DLGT low borderline
Lusiscaffold3490230770.1 Alkaloid 7DLGT medium pass
Lusiscaffold3490230780.1 Alkaloid 7DLGT medium pass
Lusiscaffold350232510.1 Alkaloid 7DLGT medium pass
Lusiscaffold3530233790.1 Alkaloid 7DLGT medium pass
Lusiscaffold3530233810.1 Alkaloid 7DLGT medium pass
Lusiscaffold3530234610.1 Alkaloid 7DLGT medium pass
Lusiscaffold3530234620.1 Alkaloid 7DLGT low borderline
Lusiscaffold3580236490.1 Alkaloid 7DLGT low borderline
Lusiscaffold3610240600.1 Alkaloid 7DLGT low borderline
Lusiscaffold3610240620.1 Alkaloid 7DLGT medium pass
Lusiscaffold3760250520.1 Alkaloid 7DLGT medium pass
Lusiscaffold40920256740.1 Alkaloid 7DLGT medium pass
Lusiscaffold4220269120.1 Alkaloid 7DLGT low borderline
Lusiscaffold4220269130.1 Alkaloid 7DLGT medium pass
Lusiscaffold4300272810.1 Alkaloid 7DLGT medium pass
Lusiscaffold4300272820.1 Alkaloid 7DLGT high pass
Lusiscaffold4300272830.1 Alkaloid 7DLGT high pass
Lusiscaffold4300272850.1 Alkaloid 7DLGT medium pass
Lusiscaffold4300272860.1 Alkaloid 7DLGT high pass
Lusiscaffold4300272870.1 Alkaloid 7DLGT high pass
Lusiscaffold4300272880.1 Alkaloid 7DLGT high pass
Lusiscaffold4300272890.1 Alkaloid 7DLGT medium pass
Lusiscaffold4300272900.1 Alkaloid 7DLGT low borderline
Lusiscaffold4540278180.1 Alkaloid 7DLGT medium pass
Lusiscaffold4620283040.1 Alkaloid 7DLGT low borderline
Lusiscaffold4620283070.1 Alkaloid 7DLGT low borderline
Lusiscaffold4620284580.1 Alkaloid 7DLGT medium pass
Lusiscaffold4640288150.1 Alkaloid 7DLGT high pass
Lusiscaffold4680290760.1 Alkaloid 7DLGT low borderline
Lusiscaffold4680290770.1 Alkaloid 7DLGT low borderline
Lusiscaffold4720293150.1 Alkaloid 7DLGT medium pass
Lusiscaffold4730294130.1 Alkaloid 7DLGT low borderline
Lusiscaffold4900303100.1 Alkaloid 7DLGT low borderline
Lusiscaffold5400315040.1 Alkaloid 7DLGT low borderline
Lusiscaffold5400315050.1 Alkaloid 7DLGT low borderline
Lusiscaffold5400315060.1 Alkaloid 7DLGT low borderline
Lusiscaffold5460317500.1 Alkaloid 7DLGT medium pass
Lusiscaffold550318040.1 Alkaloid 7DLGT medium pass
Lusiscaffold550318050.1 Alkaloid 7DLGT medium pass
Lusiscaffold550318180.1 Alkaloid 7DLGT medium pass
Lusiscaffold550318210.1 Alkaloid 7DLGT low borderline
Lusiscaffold590328980.1 Alkaloid 7DLGT low borderline
Lusiscaffold5940330670.1 Alkaloid 7DLGT medium pass
Lusiscaffold6050333580.1 Alkaloid 7DLGT low borderline
Lusiscaffold6050333880.1 Alkaloid 7DLGT medium pass