PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2406
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Lusiscaffold570321450.1 Steroid CAS medium pass
Lusiscaffold5720324830.1 Steroid CAS medium borderline
Lusiscaffold5840326610.1 Steroid CAS low borderline
Lusiscaffold620341790.1 Steroid CAS medium pass
Lusiscaffold6410346590.1 Steroid CAS medium pass
Lusiscaffold670353300.1 Steroid CAS medium pass
Lusiscaffold7010362420.1 Steroid CAS low borderline
Lusiscaffold7090363990.1 Steroid CAS medium pass
Lusiscaffold8320392400.1 Steroid CAS medium pass
Lusiscaffold8580394300.1 Steroid CAS low borderline
Lusiscaffold8630400690.1 Steroid CAS low borderline
Lusiscaffold870405780.1 Steroid CAS medium pass
Lusiscaffold9150417760.1 Steroid CAS low borderline
Lusiscaffold120030650.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold13560053580.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold160084080.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold1760097510.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold1770098800.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold2250131470.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold2390138680.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold2390138700.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold2750164890.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold280168480.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold2910181700.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold3190210010.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold3490230510.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold3630241430.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold6300343070.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold6410346760.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold670353890.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold740369380.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold760375230.1 Steroid CPD/CYP90A1 low borderline
Lusiscaffold8630401080.1 Steroid CPD/CYP90A1 medium borderline
Lusiscaffold340224440.1 Steroid CPI1 high pass
Lusiscaffold4720292400.1 Steroid CPI1 medium pass
Lusiscaffold10360007620.1 Steroid CYP51G1 medium borderline
Lusiscaffold11340019240.1 Steroid CYP51G1 medium borderline
Lusiscaffold1270044690.1 Steroid CYP51G1 medium borderline
Lusiscaffold16300088190.1 Steroid CYP51G1 low borderline
Lusiscaffold1630087070.1 Steroid CYP51G1 medium borderline
Lusiscaffold2000114310.1 Steroid CYP51G1 medium borderline
Lusiscaffold2090120830.1 Steroid CYP51G1 low borderline
Lusiscaffold2250131450.1 Steroid CYP51G1 medium borderline
Lusiscaffold2250131710.1 Steroid CYP51G1 medium borderline
Lusiscaffold250145760.1 Steroid CYP51G1 medium borderline
Lusiscaffold2610153080.1 Steroid CYP51G1 medium borderline
Lusiscaffold2720158910.1 Steroid CYP51G1 medium borderline
Lusiscaffold2720161910.1 Steroid CYP51G1 medium borderline
Lusiscaffold280168280.1 Steroid CYP51G1 medium borderline
Lusiscaffold2910181970.1 Steroid CYP51G1 medium borderline