PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold960427060.1 Alkaloid 7DLGT medium pass
Lusiscaffold960427340.1 Alkaloid 7DLGT medium pass
Lusiscaffold9770429620.1 Alkaloid 7DLGT low borderline
Lusiscaffold1120016510.1 Alkaloid 7DLH low borderline
Lusiscaffold1120016540.1 Alkaloid 7DLH medium borderline
Lusiscaffold11400020600.1 Alkaloid 7DLH medium borderline
Lusiscaffold1200031020.1 Alkaloid 7DLH medium borderline
Lusiscaffold1450061900.1 Alkaloid 7DLH medium borderline
Lusiscaffold1450061910.1 Alkaloid 7DLH medium borderline
Lusiscaffold1560079180.1 Alkaloid 7DLH medium borderline
Lusiscaffold1630086610.1 Alkaloid 7DLH medium borderline
Lusiscaffold1760097510.1 Alkaloid 7DLH medium borderline
Lusiscaffold1770098800.1 Alkaloid 7DLH medium borderline
Lusiscaffold2120123110.1 Alkaloid 7DLH medium borderline
Lusiscaffold2120123150.1 Alkaloid 7DLH medium borderline
Lusiscaffold2250131470.1 Alkaloid 7DLH medium borderline
Lusiscaffold2300135190.1 Alkaloid 7DLH low borderline
Lusiscaffold2390138700.1 Alkaloid 7DLH medium borderline
Lusiscaffold240139120.1 Alkaloid 7DLH medium borderline
Lusiscaffold240139130.1 Alkaloid 7DLH low borderline
Lusiscaffold300192190.1 Alkaloid 7DLH medium borderline
Lusiscaffold300192200.1 Alkaloid 7DLH medium borderline
Lusiscaffold300192210.1 Alkaloid 7DLH medium borderline
Lusiscaffold300192220.1 Alkaloid 7DLH medium borderline
Lusiscaffold300192280.1 Alkaloid 7DLH medium borderline
Lusiscaffold300192300.1 Alkaloid 7DLH medium pass
Lusiscaffold310200660.1 Alkaloid 7DLH medium borderline
Lusiscaffold310200670.1 Alkaloid 7DLH medium borderline
Lusiscaffold310200680.1 Alkaloid 7DLH medium borderline
Lusiscaffold310200700.1 Alkaloid 7DLH medium borderline
Lusiscaffold310200730.1 Alkaloid 7DLH medium borderline
Lusiscaffold310201930.1 Alkaloid 7DLH low borderline
Lusiscaffold3190211100.1 Alkaloid 7DLH medium borderline
Lusiscaffold3190211110.1 Alkaloid 7DLH medium borderline
Lusiscaffold3270215110.1 Alkaloid 7DLH medium borderline
Lusiscaffold3630241390.1 Alkaloid 7DLH low borderline
Lusiscaffold3630241430.1 Alkaloid 7DLH medium borderline
Lusiscaffold3770252190.1 Alkaloid 7DLH medium borderline
Lusiscaffold420266290.1 Alkaloid 7DLH medium borderline
Lusiscaffold430272080.1 Alkaloid 7DLH medium borderline
Lusiscaffold430272090.1 Alkaloid 7DLH medium borderline
Lusiscaffold610336120.1 Alkaloid 7DLH medium borderline
Lusiscaffold6180341580.1 Alkaloid 7DLH low borderline
Lusiscaffold7340369010.1 Alkaloid 7DLH medium borderline
Lusiscaffold8980408240.1 Alkaloid 7DLH medium borderline
Lusiscaffold9240422170.1 Alkaloid 7DLH medium borderline
Lusiscaffold9240422180.1 Alkaloid 7DLH medium borderline
Lusiscaffold960426730.1 Alkaloid 7DLH medium borderline
Lusiscaffold11230017410.1 Alkaloid 8HGO medium pass
Lusiscaffold12160034100.1 Alkaloid 8HGO medium borderline