PlantSME Plant secondary metabolism enzyme database

Linum usitatissimum (linum_usitatissimum)

Imported from atlas release summary for Linum usitatissimum.

2937
Candidate Protein Records
2406
Pathway-Level Records
5978
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 720 20 BAHD (265) View species results
Alkaloid pathway 546 26 7DLGT (120) View species results
Phenylpropanoid pathway 492 12 POD (211) View species results
Flavonoid pathway 313 11 UFGT (198) View species results
Rosmarinic acid pathway 219 7 C4H (89) View species results
Steroid pathway 116 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2315 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 459 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Lusiscaffold13310051710.1 Alkaloid 8HGO medium borderline
Lusiscaffold13310051720.1 Alkaloid 8HGO medium borderline
Lusiscaffold17210096090.1 Alkaloid 8HGO medium pass
Lusiscaffold19490107800.1 Alkaloid 8HGO medium borderline
Lusiscaffold19490107810.1 Alkaloid 8HGO low borderline
Lusiscaffold2920185330.1 Alkaloid 8HGO medium borderline
Lusiscaffold4180264250.1 Alkaloid 8HGO medium borderline
Lusiscaffold4180264270.1 Alkaloid 8HGO medium borderline
Lusiscaffold4500277590.1 Alkaloid 8HGO medium borderline
Lusiscaffold4500277600.1 Alkaloid 8HGO medium borderline
Lusiscaffold4880300520.1 Alkaloid 8HGO medium borderline
Lusiscaffold5420316310.1 Alkaloid 8HGO medium borderline
Lusiscaffold670355230.1 Alkaloid 8HGO low borderline
Lusiscaffold670355240.1 Alkaloid 8HGO medium borderline
Lusiscaffold6800357220.1 Alkaloid 8HGO medium borderline
Lusiscaffold7830384400.1 Alkaloid 8HGO medium borderline
Lusiscaffold80385920.1 Alkaloid 8HGO medium borderline
Lusiscaffold860398940.1 Alkaloid 8HGO medium borderline
Lusiscaffold9110416960.1 Alkaloid 8HGO medium borderline
Lusiscaffold9770430330.1 Alkaloid 8HGO medium pass
Lusiscaffold1510071900.1 Alkaloid ADC medium pass
Lusiscaffold1510071910.1 Alkaloid ADC medium pass
Lusiscaffold2610154630.1 Alkaloid ADC medium pass
Lusiscaffold1010004060.1 Alkaloid BBE medium borderline
Lusiscaffold1120016120.1 Alkaloid BBE medium borderline
Lusiscaffold11230017910.1 Alkaloid BBE medium borderline
Lusiscaffold1230039390.1 Alkaloid BBE medium borderline
Lusiscaffold1230039400.1 Alkaloid BBE medium borderline
Lusiscaffold12490042340.1 Alkaloid BBE low borderline
Lusiscaffold13240051410.1 Alkaloid BBE medium borderline
Lusiscaffold150067700.1 Alkaloid BBE medium borderline
Lusiscaffold1510071930.1 Alkaloid BBE medium borderline
Lusiscaffold1690093490.1 Alkaloid BBE medium borderline
Lusiscaffold2610154640.1 Alkaloid BBE medium borderline
Lusiscaffold2800176100.1 Alkaloid BBE medium borderline
Lusiscaffold280171060.1 Alkaloid BBE medium borderline
Lusiscaffold280171070.1 Alkaloid BBE medium borderline
Lusiscaffold280171090.1 Alkaloid BBE medium borderline
Lusiscaffold280171100.1 Alkaloid BBE medium borderline
Lusiscaffold280171120.1 Alkaloid BBE medium borderline
Lusiscaffold280171150.1 Alkaloid BBE medium borderline
Lusiscaffold280171160.1 Alkaloid BBE medium borderline
Lusiscaffold2960188930.1 Alkaloid BBE medium borderline
Lusiscaffold3610240420.1 Alkaloid BBE medium borderline
Lusiscaffold370243130.1 Alkaloid BBE low borderline
Lusiscaffold4720291430.1 Alkaloid BBE low borderline
Lusiscaffold510308070.1 Alkaloid BBE medium borderline
Lusiscaffold5960330940.1 Alkaloid BBE medium borderline
Lusiscaffold5960330950.1 Alkaloid BBE medium borderline
Lusiscaffold610335970.1 Alkaloid BBE medium borderline