PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
Csimscaffold16480127900 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold16950134710 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold16950134730 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold16950134740 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold17000136180 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold19370167360 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold2060184930 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold2060184940 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
Csimscaffold20830188470 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Csimscaffold21390195380 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold21500196580 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold21500196590 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold21920200460 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold22090202770 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold2230204970 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold2300212900 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold2300212910 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold23430217340 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold2390221780 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold24160225340 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Csimscaffold24160225380 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Csimscaffold2420225760 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold24230226080 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold2510233970 Phenylpropanoid CAD low borderline CAD__00013__sp_Q0JA75_CADH7_ORYSJ
Csimscaffold2590240810 Phenylpropanoid CAD medium pass CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Csimscaffold26070243040 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold2740255390 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold2740255400 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
Csimscaffold28460264330 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Csimscaffold290267980 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold290268000 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold29250270620 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Csimscaffold29720273680 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold310283690 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Csimscaffold32820295470 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold340302490 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold34120303760 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold34120303770 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold3520309730 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold35350310460 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold37810322480 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Csimscaffold3890327600 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Csimscaffold390328230 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold40150335480 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Csimscaffold4020335590 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold4190343350 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
Csimscaffold420344320 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Csimscaffold4320349680 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Csimscaffold4390352200 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Csimscaffold4500357590 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM