PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
FexcContig19610085480.1 Alkaloid 7DLGT low borderline
FexcContig19610085490.1 Alkaloid 7DLGT low borderline
FexcContig20000088960.1 Alkaloid 7DLGT low borderline
FexcContig20200090770.1 Alkaloid 7DLGT medium pass
FexcContig20200090770.2 Alkaloid 7DLGT medium pass
FexcContig2040092370.1 Alkaloid 7DLGT low borderline
FexcContig2040092370.2 Alkaloid 7DLGT low borderline
FexcContig20810095380.1 Alkaloid 7DLGT low borderline
FexcContig210096640.1 Alkaloid 7DLGT medium pass
FexcContig21020096860.1 Alkaloid 7DLGT low borderline
FexcContig2130098770.1 Alkaloid 7DLGT low borderline
FexcContig21360099230.1 Alkaloid 7DLGT medium pass
FexcContig2190103420.1 Alkaloid 7DLGT medium pass
FexcContig2200104180.1 Alkaloid 7DLGT low borderline
FexcContig22360106530.1 Alkaloid 7DLGT low borderline
FexcContig22450107110.1 Alkaloid 7DLGT medium pass
FexcContig23270113050.1 Alkaloid 7DLGT high pass
FexcContig23270113050.2 Alkaloid 7DLGT high pass
FexcContig23360113850.1 Alkaloid 7DLGT low borderline
FexcContig23650115620.1 Alkaloid 7DLGT medium pass
FexcContig2370115940.1 Alkaloid 7DLGT low borderline
FexcContig23860116850.1 Alkaloid 7DLGT medium pass
FexcContig24360120380.1 Alkaloid 7DLGT medium pass
FexcContig2540128240.1 Alkaloid 7DLGT low borderline
FexcContig2540128250.1 Alkaloid 7DLGT low borderline
FexcContig2540128260.1 Alkaloid 7DLGT low borderline
FexcContig254200128520.1 Alkaloid 7DLGT medium pass
FexcContig25500129130.1 Alkaloid 7DLGT high pass
FexcContig265070135650.1 Alkaloid 7DLGT medium pass
FexcContig27440141220.1 Alkaloid 7DLGT low borderline
FexcContig28300147560.1 Alkaloid 7DLGT low borderline
FexcContig3040160560.1 Alkaloid 7DLGT low borderline
FexcContig30460160780.1 Alkaloid 7DLGT low borderline
FexcContig3100163100.1 Alkaloid 7DLGT high pass
FexcContig31400165380.1 Alkaloid 7DLGT low borderline
FexcContig336010177560.1 Alkaloid 7DLGT high pass
FexcContig33890178940.1 Alkaloid 7DLGT low borderline
FexcContig33970179260.1 Alkaloid 7DLGT low borderline
FexcContig3440182280.1 Alkaloid 7DLGT low borderline
FexcContig346050183590.1 Alkaloid 7DLGT medium pass
FexcContig35360187580.1 Alkaloid 7DLGT low borderline
FexcContig35370187670.1 Alkaloid 7DLGT low borderline
FexcContig35800189810.1 Alkaloid 7DLGT low borderline
FexcContig36850195530.1 Alkaloid 7DLGT low borderline
FexcContig37590198880.1 Alkaloid 7DLGT low borderline
FexcContig37590198940.1 Alkaloid 7DLGT low borderline
FexcContig37930200520.1 Alkaloid 7DLGT low borderline
FexcContig37930200530.1 Alkaloid 7DLGT low borderline
FexcContig38030201130.1 Alkaloid 7DLGT medium pass
FexcContig38460203660.1 Alkaloid 7DLGT low borderline