PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
FexcContig105230009280.1 Alkaloid 8HGO medium pass
FexcContig11140014810.1 Alkaloid 8HGO medium borderline
FexcContig11730020470.1 Alkaloid 8HGO medium borderline
FexcContig14380044390.1 Alkaloid 8HGO medium borderline
FexcContig21810102860.1 Alkaloid 8HGO low borderline
FexcContig21890103350.1 Alkaloid 8HGO medium borderline
FexcContig24380120500.1 Alkaloid 8HGO low borderline
FexcContig25050125420.1 Alkaloid 8HGO medium borderline
FexcContig29110152940.1 Alkaloid 8HGO medium borderline
FexcContig29300154150.1 Alkaloid 8HGO medium borderline
FexcContig30850162470.1 Alkaloid 8HGO medium pass
FexcContig40200212030.1 Alkaloid 8HGO medium borderline
FexcContig6470305450.1 Alkaloid 8HGO medium borderline
FexcContig8370353150.1 Alkaloid 8HGO medium borderline
FexcContig8370353160.1 Alkaloid 8HGO medium borderline
FexcContig89020366700.1 Alkaloid 8HGO medium pass
FexcContig89020366700.2 Alkaloid 8HGO medium borderline
FexcContig92970375170.1 Alkaloid 8HGO medium borderline
FexcContig92970375170.2 Alkaloid 8HGO medium pass