PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
FexcContig12740028730.1 Alkaloid PMT medium pass
FexcContig12740028740.1 Alkaloid PMT medium pass
FexcContig12790029160.1 Alkaloid PMT medium pass
FexcContig12790029160.2 Alkaloid PMT medium pass
FexcContig14780047240.1 Alkaloid PMT medium pass
FexcContig147960047320.1 Alkaloid PMT low borderline
FexcContig15540053520.1 Alkaloid PMT medium pass
FexcContig15540053520.2 Alkaloid PMT medium pass
FexcContig17110065860.1 Alkaloid PMT low borderline
FexcContig17110065860.2 Alkaloid PMT low borderline
FexcContig17180066320.1 Alkaloid PMT medium pass
FexcContig173380067550.1 Alkaloid PMT medium borderline
FexcContig23300113420.1 Alkaloid PMT medium pass
FexcContig27360140630.1 Alkaloid PMT medium pass
FexcContig27360140630.2 Alkaloid PMT medium pass
FexcContig274010141060.1 Alkaloid PMT medium borderline
FexcContig274010141060.2 Alkaloid PMT medium borderline
FexcContig27800143930.1 Alkaloid PMT low borderline
FexcContig29320154190.1 Alkaloid PMT low borderline
FexcContig2960155630.1 Alkaloid PMT medium pass
FexcContig35250186750.1 Alkaloid PMT medium borderline
FexcContig35250186750.2 Alkaloid PMT medium borderline
FexcContig35250186750.3 Alkaloid PMT medium borderline
FexcContig35250186750.4 Alkaloid PMT medium borderline
FexcContig35270186900.1 Alkaloid PMT medium borderline
FexcContig35270186900.2 Alkaloid PMT medium borderline
FexcContig36540193690.1 Alkaloid PMT medium pass
FexcContig38150201920.1 Alkaloid PMT low borderline
FexcContig38610204430.1 Alkaloid PMT low borderline
FexcContig38610204430.2 Alkaloid PMT low borderline
FexcContig4570235170.1 Alkaloid PMT medium pass
FexcContig46270237220.1 Alkaloid PMT low borderline
FexcContig5210259580.1 Alkaloid PMT low borderline
FexcContig55470273010.1 Alkaloid PMT medium pass
FexcContig56370277050.1 Alkaloid PMT medium pass
FexcContig6780313410.1 Alkaloid PMT low borderline
FexcContig73510328010.1 Alkaloid PMT medium borderline
FexcContig73510328010.2 Alkaloid PMT medium borderline
FexcContig73510328010.3 Alkaloid PMT medium borderline
FexcContig800343820.1 Alkaloid PMT medium borderline
FexcContig95300379830.1 Alkaloid PMT low borderline
FexcContig96000381230.1 Alkaloid PMT medium pass
FexcContig96000381230.2 Alkaloid PMT low borderline