PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.21% Alkaloid pathway 23.11% Phenylpropanoid pathway 18.96% Flavonoid pathway 11.29% Rosmarinic acid pathway 8.31% Steroid pathway 8.11%
Family Distribution
BAHD 6.49% C4H 5.86% C3'H/CYP98A 5.44% UGT 3.77% IFS 3.67% POD 3.5% UFGT 3.41% 7DLGT 3.38%
Other Families 64.48%
More Families (95)
T3O 198 3.35% 4CL 186 3.14% CYP76 181 3.06% F3H 169 2.86% NMT 150 2.54% DWF4/CYP90B1 142 2.4% CAD 136 2.3% SMT1/SMT2/SMT3 121 2.04% STR 111 1.88% CODM/T6ODM 111 1.88% F3'H/CYP75B 111 1.88% CYP71 98 1.66% CAS 88 1.49% TPS 87 1.47% BR6OX2/CYP85A2 85 1.44% GES 78 1.32% IFR 77 1.3% LAC 73 1.23% GS 72 1.22% H6H 72 1.22% SGD 68 1.15% CYP90D1 63 1.06% TRI/TRII 56 0.95% CSE 50 0.85% RAS 50 0.85% T16H 45 0.76% PMT 43 0.73% SLS 42 0.71% BBE 41 0.69% IO 41 0.69% TAT 39 0.66% HCT 38 0.64% PYKS 37 0.63% ANR 37 0.63% 7DLH 36 0.61% PAL 36 0.61% NCS 34 0.57% CPD/CYP90A1 34 0.57% CCR 33 0.56% CYP51G1 31 0.52% G8O/G8H 30 0.51% FNS 29 0.49% COMT 27 0.46% F5H/CYP84A 27 0.46% GGPPS 25 0.42% F3'5'H/CYP75A 24 0.41% CPR 22 0.37% BR6OX1/CYP85A1 21 0.35% DFR 20 0.34% 16OMT 19 0.32% 8HGO 19 0.32% CNMT 19 0.32% ANS/LDOX 19 0.32% AACT 19 0.32% SMO1/SMO2 18 0.3% FPPS 18 0.3% SQS/FDFT1 16 0.27% COR 14 0.24% SQE 14 0.24% MPO 12 0.2% LAMT 12 0.2% ISY 11 0.19% DXS 11 0.19% CCoAOMT 10 0.17% DXR 10 0.17% CYP719 9 0.15% HPPR 9 0.15% HMGR 9 0.15% HMGS 9 0.15% CHI 8 0.14% CHS 8 0.14% TDC 7 0.12% DET2 7 0.12% ROT3/CYP90C1 7 0.12% MVD 7 0.12% HDR/IspH 7 0.12% TYDC_DDC 6 0.1% MVK 6 0.1% ADC 5 0.08% DWF1 5 0.08% CMK/IspE 4 0.07% HDS/IspG 4 0.07% CYP80B1 3 0.05% XMT_MXMT_DXMT 3 0.05% FK 3 0.05% DWF5 3 0.05% HYD1 3 0.05% CPI1 3 0.05% IDI 3 0.05% PMK 3 0.05% FLS 2 0.03% DWF7 2 0.03% MCT/IspD 2 0.03% CYP80F1 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DET2
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Gene Pathway Family Confidence Status Best Target
FexcContig17670069870.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig42190221340.1 Steroid DET2 medium pass DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig55850274650.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig55850274650.2 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig57040279640.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig57040279640.2 Steroid DET2 medium pass DET2__00002__sp_Q2QDF6_DET2_GOSHI
FexcContig7600333820.1 Steroid DET2 medium pass DET2__00002__sp_Q2QDF6_DET2_GOSHI