PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
FexcContig10200004310.1 Alkaloid PYKS low borderline
FexcContig11210015530.1 Alkaloid PYKS high pass
FexcContig11850021370.1 Alkaloid PYKS low borderline
FexcContig1200022800.1 Alkaloid PYKS low borderline
FexcContig13470036070.1 Alkaloid PYKS high pass
FexcContig13470036070.2 Alkaloid PYKS high pass
FexcContig137780039150.1 Alkaloid PYKS low borderline
FexcContig1430043660.1 Alkaloid PYKS low borderline
FexcContig16760062940.1 Alkaloid PYKS low borderline
FexcContig18620077770.1 Alkaloid PYKS low borderline
FexcContig19150082380.1 Alkaloid PYKS low borderline
FexcContig19690086100.1 Alkaloid PYKS low borderline
FexcContig19710086350.1 Alkaloid PYKS low borderline
FexcContig20480093180.1 Alkaloid PYKS low borderline
FexcContig21900103520.1 Alkaloid PYKS high pass
FexcContig26690136640.1 Alkaloid PYKS low borderline
FexcContig27970144900.1 Alkaloid PYKS low borderline
FexcContig29170153300.1 Alkaloid PYKS low borderline
FexcContig29990157650.1 Alkaloid PYKS low borderline
FexcContig32490172000.1 Alkaloid PYKS low borderline
FexcContig33270176140.1 Alkaloid PYKS low borderline
FexcContig39020206380.1 Alkaloid PYKS low borderline
FexcContig41240216780.1 Alkaloid PYKS medium pass
FexcContig41240216780.2 Alkaloid PYKS high pass
FexcContig41600218890.1 Alkaloid PYKS low borderline
FexcContig4210221040.1 Alkaloid PYKS low borderline
FexcContig4240221920.1 Alkaloid PYKS high pass
FexcContig42420222120.1 Alkaloid PYKS low borderline
FexcContig42420222130.1 Alkaloid PYKS low borderline
FexcContig4290223920.1 Alkaloid PYKS low borderline
FexcContig4320225530.1 Alkaloid PYKS low borderline
FexcContig49750250430.1 Alkaloid PYKS low borderline
FexcContig51620257290.1 Alkaloid PYKS low borderline
FexcContig52930263200.1 Alkaloid PYKS medium pass
FexcContig6640309860.1 Alkaloid PYKS low borderline
FexcContig8280351160.1 Alkaloid PYKS low borderline
FexcContig84510355200.1 Alkaloid PYKS low borderline