PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
FexcContig10430007990.1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig16570061470.1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig17770070740.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
FexcContig179870072420.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig20170090270.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
FexcContig20170090270.2 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
FexcContig2270108530.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig232540112860.1 Phenylpropanoid CCR low borderline CCR__00003__sp_G7IYC1_CAD2_MEDTR
FexcContig23900117190.1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
FexcContig24000118120.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig244100120970.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig24420121010.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig24910124490.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
FexcContig24910124490.2 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
FexcContig24910124490.3 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
FexcContig326270172700.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig32820173850.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
FexcContig32820173860.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
FexcContig33120175440.1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig41710219250.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig4810244330.1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig49800250790.1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig54630269320.1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig54630269320.2 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig5940288820.1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig5940288820.2 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
FexcContig692450317390.1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
FexcContig741020329470.1 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
FexcContig759610333470.1 Phenylpropanoid CCR medium pass CCR__00009__sp_Q9SAH9_CCR2_ARATH
FexcContig86500360250.1 Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig868220361030.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig868220361030.2 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
FexcContig98380385870.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ