PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
FexcContig10000490.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig1080011760.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig1490048120.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig1540052240.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig15560053800.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig18730078560.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig1890080270.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig26930137900.1 Alkaloid NCS low borderline NCS__00005__sp_Q67A25_NCS_THLFG
FexcContig27710143100.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig278970144360.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig28020145370.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig28020145370.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig28020145370.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig302020159540.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig31440165580.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig32670172830.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig36660194180.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig40230212150.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig40330212600.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig41300217190.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig41390217730.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig41390217730.2 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig41390217730.3 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig4530233650.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig48060244200.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig50380253000.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig519590258620.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig533410264390.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig60680293950.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig725110325950.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FexcContig74310329980.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig74310329990.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig78450340030.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FexcContig790341380.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA