PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
FexcContig152670051300.1 Flavonoid C4H medium borderline
FexcContig15510053400.1 Flavonoid C4H medium borderline
FexcContig1750068760.1 Flavonoid C4H medium borderline
FexcContig33740178140.1 Flavonoid C4H medium borderline
FexcContig37260197520.1 Flavonoid C4H low borderline
FexcContig411760216430.1 Flavonoid C4H low borderline
FexcContig464220237740.1 Flavonoid C4H medium pass
FexcContig50251500.1 Flavonoid C4H medium borderline
FexcContig59660289810.1 Flavonoid C4H medium borderline
FexcContig59660289810.2 Flavonoid C4H medium borderline
FexcContig59660289820.1 Flavonoid C4H medium borderline
FexcContig860900359110.1 Flavonoid C4H medium borderline
FexcContig1000001290.1 Rosmarinic Acid C4H medium pass
FexcContig1000001290.2 Rosmarinic Acid C4H medium pass
FexcContig10120003060.1 Rosmarinic Acid C4H low borderline
FexcContig10160003680.1 Rosmarinic Acid C4H medium pass
FexcContig10160003690.1 Rosmarinic Acid C4H medium pass
FexcContig102050004420.1 Rosmarinic Acid C4H medium pass
FexcContig10280005350.1 Rosmarinic Acid C4H low borderline
FexcContig10370006760.1 Rosmarinic Acid C4H medium pass
FexcContig10370006770.1 Rosmarinic Acid C4H low borderline
FexcContig104290007840.1 Rosmarinic Acid C4H low borderline
FexcContig104310008000.1 Rosmarinic Acid C4H low borderline
FexcContig104730008340.1 Rosmarinic Acid C4H low borderline
FexcContig104730008340.2 Rosmarinic Acid C4H low borderline
FexcContig105300009480.1 Rosmarinic Acid C4H medium pass
FexcContig10570009870.1 Rosmarinic Acid C4H low borderline
FexcContig10590009970.1 Rosmarinic Acid C4H medium pass
FexcContig11130014670.1 Rosmarinic Acid C4H medium pass
FexcContig1140017460.1 Rosmarinic Acid C4H low borderline
FexcContig117600020780.1 Rosmarinic Acid C4H low borderline
FexcContig117820020920.1 Rosmarinic Acid C4H medium pass
FexcContig11820021240.1 Rosmarinic Acid C4H low borderline
FexcContig11820021250.1 Rosmarinic Acid C4H low borderline
FexcContig120022470.1 Rosmarinic Acid C4H low borderline
FexcContig120022470.2 Rosmarinic Acid C4H low borderline
FexcContig12070023540.1 Rosmarinic Acid C4H low borderline
FexcContig12070023540.2 Rosmarinic Acid C4H low borderline
FexcContig12190024440.1 Rosmarinic Acid C4H low borderline
FexcContig12190024440.2 Rosmarinic Acid C4H low borderline
FexcContig124190026540.1 Rosmarinic Acid C4H medium pass
FexcContig12420026570.1 Rosmarinic Acid C4H low borderline
FexcContig12420026580.1 Rosmarinic Acid C4H low borderline
FexcContig12420026580.2 Rosmarinic Acid C4H low borderline
FexcContig1260027810.1 Rosmarinic Acid C4H low borderline
FexcContig12650028240.1 Rosmarinic Acid C4H low borderline
FexcContig12650028250.1 Rosmarinic Acid C4H low borderline
FexcContig12810029680.1 Rosmarinic Acid C4H low borderline
FexcContig13330034790.1 Rosmarinic Acid C4H low borderline
FexcContig13330034810.1 Rosmarinic Acid C4H medium pass