PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
FexcContig35480188130.1 Rosmarinic Acid C4H low borderline
FexcContig35720189430.1 Rosmarinic Acid C4H low borderline
FexcContig36210191690.1 Rosmarinic Acid C4H low borderline
FexcContig367110194560.1 Rosmarinic Acid C4H medium pass
FexcContig37260197520.1 Rosmarinic Acid C4H low borderline
FexcContig37360197910.1 Rosmarinic Acid C4H medium pass
FexcContig37720199590.1 Rosmarinic Acid C4H medium pass
FexcContig37790199760.1 Rosmarinic Acid C4H medium pass
FexcContig37890200260.1 Rosmarinic Acid C4H medium pass
FexcContig37890200270.1 Rosmarinic Acid C4H medium pass
FexcContig3930207660.1 Rosmarinic Acid C4H medium pass
FexcContig39380208020.1 Rosmarinic Acid C4H medium pass
FexcContig39880210280.1 Rosmarinic Acid C4H medium pass
FexcContig39880210290.1 Rosmarinic Acid C4H medium pass
FexcContig39880210300.1 Rosmarinic Acid C4H low borderline
FexcContig39920210510.1 Rosmarinic Acid C4H low borderline
FexcContig40210212040.1 Rosmarinic Acid C4H low borderline
FexcContig40980215100.1 Rosmarinic Acid C4H low borderline
FexcContig41020215530.1 Rosmarinic Acid C4H low borderline
FexcContig411760216430.1 Rosmarinic Acid C4H low borderline
FexcContig41440217980.1 Rosmarinic Acid C4H low borderline
FexcContig41820219870.1 Rosmarinic Acid C4H low borderline
FexcContig4200220890.1 Rosmarinic Acid C4H low borderline
FexcContig4290223840.1 Rosmarinic Acid C4H medium pass
FexcContig4290224110.1 Rosmarinic Acid C4H low borderline
FexcContig429480224370.1 Rosmarinic Acid C4H medium pass
FexcContig43280225750.1 Rosmarinic Acid C4H low borderline
FexcContig43280225750.2 Rosmarinic Acid C4H low borderline
FexcContig4370226910.1 Rosmarinic Acid C4H low borderline
FexcContig44900231630.1 Rosmarinic Acid C4H low borderline
FexcContig452300233420.1 Rosmarinic Acid C4H low borderline
FexcContig453520233940.1 Rosmarinic Acid C4H low borderline
FexcContig459230236050.1 Rosmarinic Acid C4H medium pass
FexcContig464220237740.1 Rosmarinic Acid C4H medium pass
FexcContig4800244050.1 Rosmarinic Acid C4H low borderline
FexcContig4800244060.1 Rosmarinic Acid C4H medium pass
FexcContig482700244920.1 Rosmarinic Acid C4H medium pass
FexcContig48380245150.1 Rosmarinic Acid C4H low borderline
FexcContig49380249120.1 Rosmarinic Acid C4H medium pass
FexcContig49640249870.1 Rosmarinic Acid C4H low borderline
FexcContig49950251320.1 Rosmarinic Acid C4H low borderline
FexcContig49950251320.2 Rosmarinic Acid C4H low borderline
FexcContig5000251760.1 Rosmarinic Acid C4H low borderline
FexcContig50110252220.1 Rosmarinic Acid C4H medium pass
FexcContig50251480.1 Rosmarinic Acid C4H low borderline
FexcContig50251480.2 Rosmarinic Acid C4H low borderline
FexcContig50251490.1 Rosmarinic Acid C4H low borderline
FexcContig50251490.2 Rosmarinic Acid C4H low borderline
FexcContig50251500.1 Rosmarinic Acid C4H low borderline
FexcContig50310252880.1 Rosmarinic Acid C4H low borderline