PlantSME Plant secondary metabolism enzyme database

Fraxinus excelsior (fraxinus_excelsior)

Imported from atlas release summary for Fraxinus excelsior.

2479
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 749 20 BAHD (302) View species results
Alkaloid pathway 573 21 7DLGT (101) View species results
Phenylpropanoid pathway 470 12 POD (198) View species results
Flavonoid pathway 280 10 UFGT (183) View species results
Rosmarinic acid pathway 206 7 C4H (90) View species results
Steroid pathway 201 12 SMT1/SMT2/SMT3 (78) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2115 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 472 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
FexcContig51840258140.3 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig53850266280.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig56750278340.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig56750278340.2 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig56800278560.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig56800278570.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig568520278740.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig574200280810.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig59210288110.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig60750294330.1 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
FexcContig6250298960.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig67760313230.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig68610315800.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig7120322680.1 Alkaloid GES low borderline GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig71610323570.1 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
FexcContig71610323570.2 Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
FexcContig790060341660.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
FexcContig8030344640.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig8030344640.2 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig8030344640.3 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig8030344650.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig8030344650.2 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
FexcContig80970346620.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig80970346620.2 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig80970346620.3 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig80970346620.4 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig89720368210.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
FexcContig98210385670.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU